| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4578249 | 0 (0.000) | 20 (1.530) | 17/250 | 0.1 | 100% | intergenic (+64/‑73) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
| ? | NC_002947 | = 5763126 | NA (NA) | intergenic (+145/+373) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||
GCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATG > NC_002947/4578117‑4578384 | tgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtatgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccaaacaAACgg > 1:329177‑M2/132‑136 (MQ=255) cgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGttt < 1:170101‑M2/9‑1 (MQ=255) gcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTa > 2:339326‑M2/127‑136 (MQ=255) gcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTa > 2:362542‑M2/127‑136 (MQ=255) gcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTa > 1:244825‑M2/127‑136 (MQ=255) gcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgcactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCcgc < 2:215687‑M2/15‑1 (MQ=255) attccttctcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGa < 1:331114‑M2/17‑1 (MQ=255) attccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGa < 2:7053‑M2/17‑1 (MQ=255) ttccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGaa < 1:206548‑M2/18‑1 (MQ=255) tccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAg < 2:284287‑M2/19‑1 (MQ=255) tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggc > 2:231980‑M1/1‑119 (MQ=255) ccttatcggcgcttgggtgttgaaaggatgaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGt < 2:301818‑M2/20‑1 (MQ=255) ccACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCAACACAGGCGCATGTAGGAGattctatggccggaggcaaatt > 1:270857‑M1/1‑114 (MQ=255) ttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAgg > 1:55437‑M2/105‑136 (MQ=255) aaaaGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaac > 2:231526‑M1/1‑102 (MQ=255) aaGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgc > 1:12463‑M1/1‑100 (MQ=255) ccccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccat < 2:356801‑M1/136‑40 (MQ=255) cccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatc < 1:211425‑M1/136‑41 (MQ=255) gtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATc < 2:55437‑M2/54‑1 (MQ=255) aaaaGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattatattgccggaggcaaaatttcagtaaaaacgccatcggcctctctcag > 2:262399‑M1/1‑84 (MQ=255) ccTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacc < 1:252552‑M1/136‑58 (MQ=255) cTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacct > 2:193217‑M1/1‑78 (MQ=255) actgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCa > 1:36227‑M2/62‑136 (MQ=255) gggCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgcca > 1:85163‑M1/1‑56 (MQ=255) gggCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgcca > 1:154127‑M1/1‑56 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 1:208567‑M2/55‑136 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc < 2:36227‑M2/82‑1 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 2:346525‑M2/55‑136 (MQ=255) tCGCTGGTAAACCCGCTCCTACTGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtataaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaattt < 2:296109‑M1/136‑89 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttct > 2:172545‑M1/1‑46 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttct < 1:25433‑M1/136‑91 (MQ=255) tatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAAc < 1:355216‑M2/100‑1 (MQ=255) tcctcccttcaagtcctaccatacaAGCGGGATTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTACCATTCCATCACGGCCACTCGAGCAACGTCATGAGCCCCCGCACCCCAAAGAAAACCCCCTCGGACg > 1:332320‑M2/26‑136 (MQ=255) cctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAAAGCAGGACAGCACAATTCCCCAACCATCACGGCCACACGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCACGGTCGc > 2:195‑M2/25‑136 (MQ=255) aGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcc < 1:193217‑M1/136‑111 (MQ=255) catcaCAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtca > 2:139133‑M1/1‑21 (MQ=255) cacaGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtt > 1:18005‑M1/1‑18 (MQ=255) gcgcATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggc < 2:270857‑M1/136‑124 (MQ=255) cATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgggccagagaatttctccccagcattggatactgcccgtcagtttgggcggg < 1:231980‑M1/136‑127 (MQ=255) tGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggcg > 2:262934‑M1/1‑8 (MQ=255) gTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgc < 2:138522‑M1/116‑110 (MQ=255) gTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgc > 1:138522‑M1/1‑7 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg > 2:276248‑M1/1‑5 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg < 1:309049‑M1/136‑132 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg > 1:146981‑M1/1‑5 (MQ=255) gattctttggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgc > 2:14490‑M1/1‑1 (MQ=255) gattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttgc > 2:167887‑M1/1‑1 (MQ=255) | GCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATG > NC_002947/4578117‑4578384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |