New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 652786 | 10 (0.910) | 15 (1.370) | 8/264 | 0.3 | 66.7% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
? | NC_002947 | = 4813152 | 5 (0.460) | intergenic (‑267/‑288) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
GAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/652715‑652786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCG < NC_002947/4813152‑4813054 GAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCCGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGC > 2:222653/1‑94 GAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCAGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGC < 1:222653/94‑1 AATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCC > 2:31631/1‑136 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGG < 1:224405/74‑1 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGG > 2:224405/1‑74 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC < 1:210214/92‑1 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC > 2:210214/1‑92 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGG > 1:103151/1‑74 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGG < 1:186805/74‑1 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGG < 2:103151/74‑1 ATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGG > 2:186805/1‑74 AAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAATCTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAAC > 1:74760/1‑136 AAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCAGAAAAC > 1:122469/1‑136 TTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACCCCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCAACCC > 1:263559/1‑136 TACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGCAACTCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCc > 1:225316/1‑135 GAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/652715‑652786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCG < NC_002947/4813152‑4813054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |