New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	10 (0.910)	15 (1.370)	8/264	0.3	66.7%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4813152	5 (0.460)					intergenic (‑267/‑288)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAC  >  NC_002947/652654‑652887                                                                                                                                     |                                                                                                      aCAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAc                                                                                                    >  2:136304/1‑136 (MQ=255)      cggcgCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGGGCGCGATCTCAGACCCTGa                                                                                               >  1:183857/1‑136 (MQ=255)               gCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCa                                                                                      <  2:165367/136‑1 (MQ=255)                 ggACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                    <  2:178738/136‑1 (MQ=255)                      cgcgAGGTGGACCGGGCCCGTAATGATACCGCATCCGCAGTAATAATTGGCCCTAAACAAACGTAGGTGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCg                                                                               <  1:244780/136‑1 (MQ=21)                        cgAGGTGGAACGTGCCCGGCATTATAACGGATGCGCAGCAATAATTGGCCCCAAACAAACGTTGGAGCGGGTTTACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGt                                                                             <  1:130083/136‑1 (MQ=37)                                          gCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGc                                                           >  2:238284/1‑136 (MQ=255)                                                   cGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                  <  2:267496/136‑1 (MQ=255)                                                              gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCCGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggc                                                                                 >  2:222653‑M1/1‑72 (MQ=255)                                                              gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCAGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggc                                                                                 <  1:222653‑M1/94‑23 (MQ=255)                                                               aataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctccc                                      >  2:31631‑M1/1‑71 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                   <  1:224405‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                   >  2:224405‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggc                                                                                 <  1:210214‑M1/92‑23 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggc                                                                                 >  2:210214‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                   >  1:103151‑M1/1‑70 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                   <  2:103151‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                   <  1:186805‑M1/74‑5 (MQ=255)                                                                ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                   >  2:186805‑M1/1‑70 (MQ=255)                                                                            aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaatctctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaac                         >  1:74760‑M1/1‑58 (MQ=255)                                                                            aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgcagaaaac                         >  1:122469‑M1/1‑58 (MQ=255)                                                                            aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCCGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTAACCCTGTTTACGCCCCACGcc                         >  2:285788/1‑136 (MQ=255)                                                                                                ttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcgaacccctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacaccaaccc     >  1:263559‑M1/1‑38 (MQ=255)                                                                                                 tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcgaacacctcccaggcgctgcaactcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccc    >  1:225316‑M1/1‑37 (MQ=255)                                                                                                   cccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAc  <  1:238284/136‑1 (MQ=255)                                                                                                                                     |                                                                                                      ACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAC  >  NC_002947/652654‑652887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.