New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	10 (0.910)	15 (1.370)	8/264	0.3	66.7%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4813152	5 (0.460)					intergenic (‑267/‑288)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC  >  NC_002947/4813018‑4813224                                                                                                                                       |                                                                         gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTgg                                                                         >  2:167522/1‑136 (MQ=255)             cAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAgcgc                                                             <  1:209191/136‑1 (MQ=255)             cAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGCTTTTCAGCGCCTGGGAGGTGTTCGCAGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCAGGGAGATAGAgcgc                                                             >  1:241687/1‑136 (MQ=255)              aaTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGcgcc                                                            >  1:107684/1‑136 (MQ=255)                   gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGccgcccg                                                       >  1:31631/1‑136 (MQ=255)                                     ggggtAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTGCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGggagatcgagcgccgcccgcgcggcgcttcgcgggta                                     >  1:225316‑M2/2‑99 (MQ=255)                                      gggTTGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGGGTTCGCCGGGAGAGTTTCAGCGCCTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaa                                    >  1:263559‑M2/1‑98 (MQ=255)                                                          gTTTTCTGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTTGCCGGAGGATTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt                >  1:122469‑M2/1‑78 (MQ=255)                                                          gTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGATTCAGCGCCTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt                >  1:74760‑M2/1‑78 (MQ=255)                                                                       gggAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattatt   >  2:31631‑M2/1‑65 (MQ=255)                                                                                                                  gCCGGGAGAGTTTCAGCGCCTGggagatcgagcgccgcctgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattc  <  1:222653‑M2/94‑73 (MQ=255)                                                                                                                  gCCGGGAGAGTTTCAGCGCCTGggagatcgagcgccgccggcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattc  >  2:222653‑M2/1‑22 (MQ=255)                                                                                                                  gCCGGAGGATTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    <  1:210214‑M2/92‑71 (MQ=255)                                                                                                                  gCCGGAGGATTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    >  2:210214‑M2/1‑22 (MQ=255)                                                                                                                                    ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    >  1:103151‑M2/1‑4 (MQ=255)                                                                                                                                    ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    <  1:186805‑M2/74‑71 (MQ=255)                                                                                                                                    ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    <  2:103151‑M2/74‑71 (MQ=255)                                                                                                                                    ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    >  2:186805‑M2/1‑4 (MQ=255)                                                                                                                                    ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    <  1:224405‑M2/74‑71 (MQ=255)                                                                                                                                    ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat    >  2:224405‑M2/1‑4 (MQ=255)                                                                                                                                       |                                                                         GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC  >  NC_002947/4813018‑4813224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.