| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1015854 | 0 (0.000) | 14 (0.820) | 13/234 | NT | 73.7% | intergenic (‑81/‑687) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 5067412 | 10 (0.590) | coding (1092/1098 nt) | PP_4459 | transposase | |||||
ACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGG > NC_002947/1015721‑1015986 | tcgtcggttcagctcaacttgttcatcgtcactgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGa < 1:492240‑M1/9‑1 (MQ=255) aGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgt > 2:416642‑M1/1‑130 (MQ=255) cTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagata > 1:154539‑M1/1‑122 (MQ=255) tGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgtt > 2:386499‑M1/1‑115 (MQ=255) gCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctcttta > 1:175913‑M1/1‑108 (MQ=255) ccaccGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattct < 2:235872‑M1/136‑33 (MQ=255) ctgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTa < 2:165731‑M1/40‑1 (MQ=255) tgagcacgatgtcttgagaattcatcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTAt > 1:362228‑M1/96‑136 (MQ=255) accGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcg < 2:452724‑M1/136‑35 (MQ=255) tAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgc < 1:386499‑M1/136‑40 (MQ=255) ctcATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctc < 1:416642‑M1/136‑51 (MQ=255) atcgctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAAc > 1:446914‑M1/73‑136 (MQ=255) ctccaccccgcgtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACagag > 1:165731‑M1/69‑136 (MQ=255) gtcctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagtcagaacATTAGTGGAAACGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTatgaat < 2:364892‑M1/79‑1 (MQ=255) cctgtttgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTatgaatga < 2:324118‑M1/81‑1 (MQ=255) gTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgt > 1:240517‑M1/1‑59 (MQ=255) gTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgc < 1:97340‑M1/129‑71 (MQ=255) gTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgc > 2:97340‑M1/1‑59 (MQ=255) tgaccaaggaagcgtagctcaaatggaatacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTgcgc < 1:481058‑M1/87‑1 (MQ=255) aaTAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcac > 2:121681‑M1/1‑53 (MQ=255) agctcaaatggaatacatatatttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaaa < 1:38888‑M1/102‑1 (MQ=255) gctcaaatggaatacttatttttaagactgaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGaaaaaa > 2:396199‑M1/34‑136 (MQ=255) cGAAAAGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgag > 2:441713‑M1/1‑29 (MQ=255) atacttatttttgagacagaacATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTc > 1:324118‑M1/23‑136 (MQ=255) aaaGTGTGACATGGAATAAATTAGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgagagg > 1:247852‑M1/1‑26 (MQ=255) aGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccctggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgagagggttgggcgttgtgcagcgctaa < 1:441713‑M1/136‑133 (MQ=255) aGTGtcctgtctcagataaaacgttctctttattctcgcgtgccattgcctctcgggcaccatggatcttgcgcaagatgtcttcacctttcgcgctccagacgtaccgagagggttgggcgttgtgcagcgctaa < 2:4705‑M1/136‑133 (MQ=255) | ACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGG > NC_002947/1015721‑1015986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |