New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	660935 =	15 (0.670)	4 (0.210)	3/226	1.2	27.7%	intergenic (+64/‑103)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	661517 =	8 (0.420)					intergenic (+24/+103)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein

GACCGCCACGTAAACGATGGGAGCCTGGACGTTGCATATCGTCCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661074‑660935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagggcttcgccctcatTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCG  >  NC_002947/661517‑661566                                                                                                                                                                                                GACCGCCACGTAAACGATGGGAGCCTGGACGTTGCATATCGTCCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCC                                                        <  2:141384/136‑1                     GAGCCTGGACGTTGCATATCGTCCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCC                                    <  1:34635/136‑1                                                       ATTGCATTCAATGTTAGCGGCATTGGTGCGATTGAGCTGGGCAGTATTTTTACGGGTTGTGACGCTGTTGTGGTCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACTGTGACCGCGAAAGCAGGCCGACCCG  <  2:504412/136‑1                                                                                 TGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCG  <  1:119969/110‑1                                                                                 TGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCG  >  2:119969/1‑110                                                                                                                                                                                                GACCGCCACGTAAACGATGGGAGCCTGGACGTTGCATATCGTCCTCCTTTGAACATTGCATTCAAAGGTAGCGGCATTGGTGCGATGGACCAGGGCCGGATATTTACCGGTTGTGACGCTGGTGAGGGCTTCGCCCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/661074‑660935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagggcttcgccctcatTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCG  >  NC_002947/661517‑661566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.