| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 660935 = | 15 (0.670) | 4 (0.210) | 3/226 | 1.2 | 27.7% | intergenic (+64/‑103) | speA/PP_0568 | biosynthetic arginine decarboxylase/hypothetical protein |
| ? | NC_002947 | 661517 = | 8 (0.420) | intergenic (+24/+103) | PP_0568/PP_0569 | hypothetical protein/MATE efflux family protein | |||||
GCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGG‑CCGCAAAGCGGCCCCAATCAGCGACAC > NC_002947/661397‑661629 | gagcctggacgttgcatatcgtcctcctttgaacattgcattcaaaggtagcggcattggtgcgatggaccagggccggatatttaccggttgtgacgctggtgagggcttcgccctcatTTCGCGACACAAGGcc < 1:34635‑M2/16‑1 (MQ=255) gAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGc < 2:150913/136‑1 (MQ=255) tGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCcac > 2:267975/1‑136 (MQ=255) gCCCGCTACATCATCGCCAACCCCATTCGGTCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCcacaa < 2:98294/136‑2 (MQ=255) gCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATATCGCGACGCAAGGCCGCTCCcacaa < 2:291820/136‑2 (MQ=255) attgcattcaatgttagcggcattggtgcgattgagctgggcagtatttttacgggttgtgacgctgttgtggtcttcgccctcatTTCGCGACACAAGGCCGCTCCCACTGTGACCGCGAAAGCAGGCCGACCCg < 2:504412‑M2/50‑1 (MQ=255) tCGTGCGGCGGGCTGGCGAGAATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCGTCATTTCGCGACACAAGGCCGCTCCCACTGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTgg < 2:100981/136‑1 (MQ=255) tgcgatggaccagggccggatatttaccggttgtgacgctggtgagggcttcgccctcatTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCg < 1:119969‑M2/50‑1 (MQ=255) tgcgatggaccagggccggatatttaccggttgtgacgctggtgagggcttcgccctcatTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCg > 2:119969‑M2/61‑110 (MQ=255) aTGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGG‑CCGGCCAGCGGCCCCaa > 1:413133/1‑136 (MQ=255) gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGGCCCCCAAACCGCCCCCAAACacccccc > 1:110128/1‑130 (MQ=38) gCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGAGGGAGCGGCCTAGCGACGCGATGGG‑CCCCAAAGCGGCCCCAATAACCGacac > 1:66193/1‑136 (MQ=255) | GCGAGCGGTGGCCCGCTACATCATCGCCAACCCCATTCGGGCGGGCCTCGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCGATGGG‑CCGCAAAGCGGCCCCAATCAGCGACAC > NC_002947/661397‑661629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |