New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	660935 =	15 (0.670)	4 (0.210)	3/226	1.2	27.7%	intergenic (+64/‑103)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	661517 =	8 (0.420)					intergenic (+24/+103)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein

GCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTC  >  NC_002947/660827‑661054                                                                                                             |                                                                                                                        gCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTcac                                                                                              >  1:292257/1‑136 (MQ=255)     tGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCGCACCAGCGTAACAAcc                                                                                          >  1:278225/1‑136 (MQ=255)     tGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCGCCTGCAAAAGCCTGTGCTGGCGTTTGTGGGAGCGGCCATGCCTCCCGATATTATGGCGCAACCCTCACCAACCGCACAAcc                                                                                          >  1:72090/1‑136 (MQ=255)            ggggTTGACCCGGTGTTCGATGGTGTCGTCGTAATTGAGGGGGCCGCTCGTGCAAAAGCCTGTTCTGCGTTTTGTGGGTGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAat                                                                                   <  1:545882/136‑1 (MQ=37)                      cGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATTAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGcccg                                                                         >  1:523809/1‑135 (MQ=255)                                       gtcgtAATTGAGGGGGCCGCTCCTGCAAATGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATg                                                        <  1:385982/136‑1 (MQ=255)                                       gtcgtAATTGAGGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGTAGCGGCCTTGCGTCGCGATATGAGGGCTAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATg                                                        <  1:114536/136‑1 (MQ=255)                                                 ccGGGGCCGCTCCTGAAAACGCGTGTGCTGCATTTTGGGGGGGCGGCGTGGCGTCGCTATATGTGGGCCACCCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCtt                                              <  1:307360/135‑1 (MQ=255)                                                      gCCGCTCCTGCAAAAGCGGGTGCTGCCTTTTGTGGGCGGGGCCTTGCGGCGCTATATGCGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAAt                                         <  2:523809/136‑1 (MQ=255)                                                      gCCGCTCCTGAAAAAGCCTGGGCTGCCTTTTGTGGGAGGGGCCTGGCGGCGCTATATGCGGGCTACGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAAt                                         <  1:167756/136‑1 (MQ=255)                                                      cccGCCCCTCCAAAAGCCTGGGCGGCTTTTTGTGGGCGGGGCGTGGCGGCGCTATATGTGGGCTAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAAt                                         <  1:252423/135‑1 (MQ=255)                                                           cgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCa                                                              >  2:119969‑M1/51‑110 (MQ=255)                                                           cgggtcggcctgctttcgcggtcactgtgggagcggccttgtgtcgcgaaATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCa                                                              <  1:119969‑M1/60‑1 (MQ=255)                                                           cgggtcggcctgctttcgcggtcacagtgggagcggccttgtgtcgcgaaATGAGGGCGAAGACCACAACAGCGTCACAACCCGTAAAAATACTGCCCAGCTCAATCGCACCAATGCCGCTAACATTGAATGCAAt                                    <  2:504412‑M1/86‑1 (MQ=255)                                                                  aaaGCCTGTGCTGCCTTTTGTGGGCGGGGCCTTGCGTCGCTATATGCGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCaaa                             <  2:218042/136‑1 (MQ=255)                                                                          tgctgcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACg                     >  1:421372/1‑136 (MQ=255)                                                                              gcCTTTTGTGGGAGCGGCCTTGCGTCGCTATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGatat                 <  1:330731/136‑1 (MQ=255)                                                                                    tgtgGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACg           >  2:522819/1‑136 (MQ=255)                                                                                             ggccttgtgtcgcgaaATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTc  <  1:34635‑M1/120‑1 (MQ=255)                                                                                                             |                                                                                                                        GCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTC  >  NC_002947/660827‑661054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.