| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1825976 | 0 (0.000) | 9 (0.030) | 5/264 | NT | 100% | coding (748/1422 nt) | PP_1624 | group II intron‑encoding maturase |
| ? | NC_002947 | = 2075325 | NA (NA) | coding (707/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
CGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGA > NC_002947/1825906‑1826125 | cGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTtgctgtcgaatatcctgctcgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttatctttgac > 2:6761340‑M1/1‑71 (MQ=255) aaggcggaggggacgCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtga < 2:1899671‑M1/145‑112 (MQ=255) gggACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccga > 2:4873168‑M1/1‑30 (MQ=255) ggACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgat > 1:4232015‑M1/1‑29 (MQ=255) ggACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgat > 1:811486‑M1/1‑29 (MQ=255) ggACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgat > 1:3163552‑M1/1‑29 (MQ=255) gACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatc > 2:3477570‑M1/1‑28 (MQ=255) gACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctt < 2:1238954‑M1/101‑74 (MQ=255) gACGCCGCAAGGCGGCCC‑CTCCTGCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctt > 1:1238954‑M1/1‑28 (MQ=255) ctgcgttgggctgacgacaccgcccgtcttgatcccggattcaaggtagcggctaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgatttacccgatcgaaaaacttctccagatcgag < 1:5835048‑M1/144‑144 (MQ=255) gCCGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagtt > 2:6122578‑M1/1‑5 (MQ=255) ccGTgggctggcgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc < 1:289880‑M1/150‑147 (MQ=255) ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc < 2:2383916‑M1/150‑147 (MQ=255) ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc > 2:5194862‑M1/1‑4 (MQ=255) ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc < 2:2218622‑M1/150‑147 (MQ=255) ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc > 1:1396399‑M1/1‑4 (MQ=255) ccGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc < 2:1301044‑M1/150‑147 (MQ=255) ccGTgggctgaagacacctcccgacatgatcacggcttaaaggtagctgctaataagcctgtgtacgaacttgtctttgatcctacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttc < 1:2399367‑M1/150‑147 (MQ=255) ccGTggactgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgaaccgatcgaaaaacttctccagatcgagttc > 2:2416435‑M1/1‑4 (MQ=255) cGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcc < 1:4479543‑M1/150‑148 (MQ=255) cGTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcc < 1:2429084‑M1/150‑148 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca < 2:5254817‑M1/150‑149 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca > 1:6857090‑M1/1‑2 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca > 2:4734275‑M1/1‑2 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca < 2:5254824‑M1/150‑149 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca > 1:3396187‑M1/1‑2 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca < 1:1711217‑M1/150‑149 (MQ=255) gTgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttcca < 2:816356‑M1/150‑149 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:1608034‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:4594262‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:3691148‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:3691096‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:2776768‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 2:2683847‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 1:4799718‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 1:1391789‑M1/150‑150 (MQ=255) tgggctgacgacaccgcccgacatgatcccggcttcaaggtagcggcgaataagcctgagtacgcacttgtctttgatccgacgttcgatgcaggccatgaggatgtcgtgattgacccgatcgaaaaacttctccagatcgagttccac < 1:1391740‑M1/150‑150 (MQ=255) | CGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGACCGCGAGCTGGAGCGGCGGGGCCATCGCTTCGTACGTTATGCCGATGATGCGAACATCTATGTACGCAGTCCCCGGGCCGGCGAACGGGTGTTGGTCAGCGTCGAGCGCTTCCTGAGA > NC_002947/1825906‑1826125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |