New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 18259760 (0.000)9 (0.030) 5/264 NT 100% coding (748/1422 nt) PP_1624 group II intron‑encoding maturase
?NC_002947 = 2075325 NA (NA)coding (707/1422 nt) PP_1846 group II intron‑encoding maturase

CAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGA  >  NC_002947/2075212‑2075397
                                                                                                                 |                                                                        
cactCACGACATCCTCCGGGCCTGCATCGAACGTCGGATCAAAGACACGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTc                                      <  1:553916/147‑1 (MQ=0)
                                    gaacAAAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTGGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGa  <  1:3715700/147‑1 (MQ=0)
                                                                                                                 |                                                                        
CAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGCTGTCGAATATCCTGCTCGACGAACTCGA  >  NC_002947/2075212‑2075397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.