mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,332,076 | 0 | C | T | 59.3% | ‑3.9 / 29.2 | 27 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,438,466 | 0 | G | C | 53.8% | ‑3.9 / 13.8 | 13 | intergenic (‑29/‑89) | PP_5648/PP_3928 | hypothetical protein/hypothetical protein |
| * | NC_002947 | 4,353,698 | 0 | A | G | 51.6% | 2.7 / 41.5 | 31 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 5,993,916 | 0 | A | C | 46.9% | ‑4.8 / 52.2 | 32 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 4,950,343 | 0 | C | . | 33.3% | 24.4 / 10.9 | 12 | intergenic (+709/+89) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| * | NC_002947 | 699,725 | 0 | A | G | 28.6% | 24.2 / 12.0 | 21 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 2,583,079 | 0 | G | T | 26.1% | 40.7 / 12.5 | 23 | P103Q (CCG→CAG) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| * | NC_002947 | 2,092,447 | 0 | A | C | 25.0% | 33.6 / 11.7 | 20 | intergenic (+268/+650) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5993776 | 95 (5.960) | 3 (0.200) | 3/248 | 0.9 | 4.4% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947 | 5993968 = | 40 (2.670) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | 4813167 = | 5 (0.310) | 6 (0.380) | 3/260 | 1.0 | 19.1% | intergenic (‑282/‑273) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 4950366 | 46 (2.930) | intergenic (+732/+66) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein | |||||