New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3371545 =	7 (0.750)	6 (0.660)	5/258	0.4	63.7%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	5354537 =	0 (0.000)					coding (2014/2937 nt)	PP_4704	hypothetical protein

ATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3371666‑3371545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACG  >  NC_002947/5354537‑5354612                                                                                                                                                                                                        ATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTT                                                                <  1:212358/136‑1            CGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTTCGCCGGCTTCC                                                     <  2:144353/136‑1            CGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTTCACCGGCTTCC                                                     <  1:53439/136‑1                   CCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCG                                              >  1:193229/1‑136                                 ACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGA                                <  2:193229/136‑1                                                               TTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACG  >  2:180905/1‑136                                                                                                                                                                                                        ATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3371666‑3371545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACG  >  NC_002947/5354537‑5354612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.