New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3371545 =	7 (0.750)	6 (0.660)	5/258	0.4	63.7%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	5354537 =	0 (0.000)					coding (2014/2937 nt)	PP_4704	hypothetical protein

AGGGCAAGGTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCA  >  NC_002947/5354415‑5354616                                                                                                                           |                                                                                atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGtt                                                                    <  1:212358‑M2/14‑1 (MQ=255)         gTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagata                                                            <  1:24004‑M2/136‑18 (MQ=255)            cggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTtcc                                                         <  2:144353‑M2/25‑1 (MQ=255)            cggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCACCGGCTtcc                                                         <  1:53439‑M2/25‑1 (MQ=255)                   ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTtccgcatccg                                                  >  1:193229‑M2/105‑136 (MQ=255)                                 accagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGa                                    <  2:193229‑M2/46‑1 (MQ=255)                                                         aaCCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgag            <  1:232826‑M2/136‑66 (MQ=255)                                                               tttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACg      >  2:180905‑M2/61‑136 (MQ=255)                                                                   ccAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa  >  1:126948‑M2/1‑61 (MQ=255)                                                                   ccAGCCTGGACATTGCCAACAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa  >  2:130033‑M2/1‑61 (MQ=255)                                                                                                                           |                                                                                AGGGCAAGGTAGACCGCTACGCACCGGTTACCATCAAGGGCGCACTCAACCCGTTCAACCCACTGGCCAGCCTGGACATTGCCACCAGCTTCAAGCGCGTCGAATTGACCACGCTGACGCCCTACTCCGGCAAGTTCGCCGGCTTCCGCATCCGCAAGGGCCGGCTGAACCTGGACCTGCACTATCTGATCACCAACGGCCA  >  NC_002947/5354415‑5354616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.