| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3371545 = | 7 (0.750) | 6 (0.660) | 5/258 | 0.4 | 63.7% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947 | 5354537 = | 0 (0.000) | coding (2014/2937 nt) | PP_4704 | hypothetical protein | |||||
GGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAT > NC_002947/3371422‑3371666 | ggCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCga > 1:104199/1‑136 (MQ=255)ggCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCga > 1:139314/1‑136 (MQ=255) gTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAg < 2:152629/136‑1 (MQ=255) cGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGATGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAAt > 1:122531/1‑136 (MQ=255) tCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTg > 2:119361/1‑136 (MQ=255) cgttggtgatcagatagtgcaggtccaggttcagccggcccttgcggatgcggaagccggcgaacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTaaa > 2:180905‑M1/77‑136 (MQ=255) ttCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCga > 1:83797/1‑136 (MQ=255) tcgtcgCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTGACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAATTATATGATTTAAAAGGTTATTCgag < 2:122531/136‑1 (MQ=255) tcagccggcccttgcggatgcggaagccggcgaacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGt < 2:193229‑M1/90‑1 (MQ=255) cggatgcggaagccggcgaacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTgg > 1:193229‑M1/33‑136 (MQ=255) ggaagccggtgaacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCg < 1:53439‑M1/111‑1 (MQ=255) ggaagccggcgaacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCg < 2:144353‑M1/111‑1 (MQ=255) aacttgccggagtaGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAt < 1:212358‑M1/122‑1 (MQ=255) | GGCTTTGTTCCAGGCGGTGCCGGCGGCCGGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAT > NC_002947/3371422‑3371666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |