| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 624412 = | 190 (0.960) | 10 (0.050) | 8/270 | NT | 5.3% | coding (498/702 nt) | PP_0537 | transcriptional regulator |
| ? | NC_002947 | 624448 = | 174 (0.900) | coding (462/702 nt) | PP_0537 | transcriptional regulator | |||||
ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/624563‑624412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTTGC > NC_002947/624448‑624596 ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 2:3052028/150‑1ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 1:3481230/150‑1ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 1:3481580/150‑1ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 1:3481788/150‑1ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 1:4264401/150‑1ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCACTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGG < 1:357560/150‑1 CCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGG < 1:2363767/150‑1 CTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGC > 1:3405426/1‑150 CTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGC > 1:636397/1‑150 CCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCCTCGACCACCTGGGTCATG‑CCCA‑‑‑GGTCGATGGCCAGGGTAGCTTGCAGCGGAA < 2:1866807/150‑1 AGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCCTCG‑‑‑ACCTGGG‑CCTGACCCAGGTGGGCGAGGGCCCGGGGAGCGTGCAGCGGCATCAGCGGGAGCATGTTGCTGGCCGGCCGTGCCCGGCCGATTGCGTTGCCGGCGTG > 1:2111633/1‑150 ACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAA > 1:4496873/1‑150 TGGCCATCG‑‑‑ACCTGGG‑CATGGCCCAGGTGGTCGAGGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGC > 2:1482798/1‑150 GCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAG > 2:16416/1‑150 CCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGG > 2:2913649/1‑150 CATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGT > 2:630606/1‑150 CATCG‑‑‑ACCTGGG‑CATGACCCA‑‑‑GGTCGATGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCT > 2:1016988/1‑150 CATCG‑‑‑ACCTGGG‑CATGACCCA‑‑‑GGTCGATGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCT > 1:301244/1‑150 ATCG‑‑‑ACCTGGG‑CATGACCCAGGTG‑‑‑GATGGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTT > 1:3102695/1‑150 GGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGTCGTT < 2:1679832/150‑1 GGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTT < 1:1467831/150‑1 GGCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTT < 1:4473017/150‑1 GCCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTTG > 2:2544369/1‑150 CCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCTGAATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTTGC < 1:731785/150‑1 CCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTTGC > 2:4269651/1‑150 ACCTGCGCTTGCCGGCAAAAGCCCTGAAGGGCTTGGGTGTGCAAGCCGGCAACGCAATCTGCCTGGCAATGCCGGCCAGCAACATGCTCCCGCTGATTCCGCTGCAAGCTACCCTGGCCATCG‑‑‑ACCTGGG‑CATGACCCAGGTGGTCGAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/624563‑624412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCAGGGTAGCTTGCAGCGGAATCAGCGGGAGCATGTTGCTGGCCGGCATTGCCAGGCAGATTGCGTTGCCGGCTTGCACACCCAAGCCCTTCAGGGCTTTTGCCGGCAAGCGCAGGTGCTTGCTGCCCACCGGCGACAGCAAGCCGTTGC > NC_002947/624448‑624596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |