| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3717876 = | 228 (1.160) | 13 (0.070) | 10/266 | NT | 5.7% | coding (378/441 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase |
| ? | NC_002947 | 3717910 = | 207 (1.090) | coding (344/441 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase | |||||
GGCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3718029‑3717876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCGA > NC_002947/3717910‑3718057 GGCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGC < 2:1711532/150‑1GGCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGC < 2:1711386/150‑1 GCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCG > 2:1839824/1‑150 GCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCG > 1:575255/1‑150 CCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGA < 2:1977217/150‑1 CACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGAT > 1:1028238/1‑150 CACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGAT > 1:1538283/1‑150 CACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGAT < 1:2815804/150‑1 CACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGAT < 1:294155/150‑1 CACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGAT < 2:2816986/150‑1 CCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCG‑CCACCAGCTCACCGCGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTT < 2:3317962/150‑1 TGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCA > 1:1905242/1‑150 GCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCAC > 2:3370530/1‑150 GCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTACAGCCCAGCGCCAC > 2:1803613/1‑150 CGACAACCAGCGCGGTGAGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGT < 2:431537/96‑1 CGACAACCAGCGCGGTGAGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGT > 1:431537/1‑96 AACCAGCGCGGTGAGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAG > 1:1660258/1‑114 AACCAGCGCGGTGAGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAG < 2:1660258/114‑1 ACCAGCGCGGTGAGCTGGTTGTCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGG > 1:445980/1‑150 CGCGGTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAG > 2:2307294/1‑150 CGCGGTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGCTGCGGACTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAG > 2:2307360/1‑150 GTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTAT < 1:3370530/150‑1 GTGAGCTGG‑TGGCGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTACAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTAT < 1:1803613/150‑1 CGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTCGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGG > 1:3438881/1‑150 CGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGG > 1:551315/1‑150 CGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGG > 2:1975697/1‑150 CGATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGG < 1:3767698/150‑1 GATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGC > 2:328327/1‑150 GATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGC > 2:3363613/1‑150 ATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCG > 2:4220779/1‑150 ATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCG > 1:1317019/1‑150 ATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCG > 2:4220750/1‑150 ATGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCAGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCG > 2:3636435/1‑150 TGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCGA > 2:3671053/1‑150 TGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCGA < 1:2945430/150‑1 TGCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCGA > 2:1394118/1‑150 GGCCACGGTGGCGCTGGGCTGCACCATCGACTACCTGGCCCCGGCGCTGCGCGATGACGTGCTCACCGCCCACGCCAGCGAAGTCAGCCGCAAAGGCCGCACCGGCCTGTACGACGTGCGCATCGACAACCAGCGCGGTGAGCTGG‑TGGCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3718029‑3717876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgCGCACGTCGTACAGGCCGGTGCGGCCTTTGCGGCTGACTTCGCTGGCGTGGGCGGTGAGCACGTCATCGCGCAGCGCCGGGGCCAGGTAGTCGATGGTGCAGCCCAGCGCCACCGTGGCCTGGTCGTAGCTATTGCAGGCGAAGGCGA > NC_002947/3717910‑3718057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |