New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4585441 =	75 (0.380)	11 (0.070)	6/236	NT	13.9%	intergenic (‑48/+123)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	4585542 =	72 (0.430)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

GGCACCTGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4585607‑4585441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacccgctcctac‑gggggGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTTCG  >  NC_002947/4585542‑4585687                                                                                                                                                                                                                                                                                                                            GGCACCTGCCGTTCGGCATCGGGCGCATCGAAAACGCCCGTTAACCCGGTTCCGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAA                                                                                                                                                                      <  1:2295214/150‑1   CACCTGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGGGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAAC                                                                                                                                                                    <  2:5337/150‑1    ACCTGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACC                                                                                                                                                                   <  2:1237049/150‑1       TGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGC                                                                                                                                                                <  1:678217/150‑1       TGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGC                                                                                                                                                                <  2:4396488/150‑1       TGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGC                                                                                                                                                                <  1:3102787/150‑1        GCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCT                                                                                                                                                               <  2:2335775/150‑1         CCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTC                                                                                                                                                              <  2:267072/150‑1            TTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACACGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGTACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTA                                                                                                                                                           <  1:1943179/150‑1              CGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑G                                                                                                                                                        <  2:4461367/150‑1              CGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTCCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑G                                                                                                                                                        <  2:4461443/150‑1                 CATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGG                                                                                                                                                     <  1:4010651/150‑1                                                                    CCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATG                                                                                                  >  1:3745014/1‑150                                                                                 GGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGG                                                                                      >  1:2871210/1‑150                                                                                 GGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGT                                                                                     >  1:885064/1‑150                                                                                  GTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGGGGGGGGCCCCGTGTGAACCTGGTTAACGGGCTTTTTGGATGGGCCAGATGCCGAACGGCCGGg                                                                                     >  2:895596/1‑149                                                                                  GTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTG                                                                                    >  2:3371792/1‑150                                                                                  GTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCGGAACCGTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTG                                                                                    >  2:3371772/1‑150                                                                                   TTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGC                                                                                   >  1:102486/1‑150                                                                                   TTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGC                                                                                   >  1:102442/1‑150                                                                                              ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTAT                                                                        >  1:2175147/1‑150                                                                                                                                            TTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTC                          >  1:2548216/1‑150                                                                                                                                            TTCGCGGGTAAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAAACTTGTTAACGGGCTTTTTAGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTGTTGCCGTACCACGACCAGCGGTGGCCGTTC                          >  1:1021437/1‑150                                                                                                                                                     AAACCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCT                 >  2:943504/1‑150                                                                                                                                                        CCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCA              >  1:817259/1‑150                                                                                                                                                        CCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCA              >  1:3085886/1‑150                                                                                                                                                        CCCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCA              >  1:401880/1‑150                                                                                                                                                        CCCGCTCCTAC‑‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCAC             >  2:111947/1‑150                                                                                                                                                         CCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCAC             >  1:1084665/1‑150                                                                                                                                                         CCGCTCCTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCAC             >  1:101553/1‑150                                                                                                                                                         CCGCTCCTAC‑‑GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACC            >  1:2319821/1‑150                                                                                                                                                             cccccC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTG         <  1:1490734/145‑1                                                                                                                                                               CTAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGG       >  2:558636/1‑150                                                                                                                                                                tacgGGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGG       >  1:765589/5‑150                                                                                                                                                                TAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGT      >  1:4374515/1‑150                                                                                                                                                                TAC‑GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGT      >  1:1739158/1‑150                                                                                                                                                                    GGGGGGGGGGGCACAGTCTGAACCTTTTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCGATTGGGTATTGCCGTACCAGGACCAGCGGTGGCCGTTAATCAGGTGTTAACCCTGGGTTTg   >  2:1166973/1‑149                                                                                                                                                                    GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGGTTTTTCGATGCGCCAGATGCAGAACGCCAGGTGCCAGGGCTCTATGCGCATACATAGGGTCTTGACGTACAAACACCACCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTac   >  2:864911/1‑148                                                                                                                                                                    GGGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTTC   <  2:4223438/150‑1                                                                                                                                                                     GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTTCG  <  2:2934351/150‑1                                                                                                                                                                     GGGGGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTTCG  <  1:49288/150‑1                                                                                                                                                                                                                                                                                                                            GGCACCTGCCGTTCGGCATCTGGCGCATCGAAAAAGCCCGTTAACAAGGTTCAGACTGTGCCCCCCCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTAC‑GGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4585607‑4585441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacccgctcctac‑gggggGGGGGGCACAGTCTGAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAGGTCTTCACCCTGGGTTTCG  >  NC_002947/4585542‑4585687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.