| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6005183 = | 171 (0.870) | 15 (0.080) | 10/262 | NT | 8.3% | coding (732/1491 nt) | amaB | L‑piperidine‑6‑carboxylate dehydrogenase |
| ? | NC_002947 | 6005228 = | 171 (0.910) | coding (687/1491 nt) | amaB | L‑piperidine‑6‑carboxylate dehydrogenase | |||||
CTGAAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6005338‑6005183‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgccGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > NC_002947/6005228‑6005373 CTGAAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTT < 2:229208/150‑1CTGAAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTT < 2:1597676/150‑1 AAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCT < 2:2542155/150‑1 AAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCT < 2:3696666/150‑1 AGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGC < 1:216850/150‑1 AGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGC > 1:2768520/1‑150 AGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGC < 2:3766541/150‑1 AGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGGACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGC < 2:1505325/150‑1 AGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCCGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATC > 2:4318234/1‑150 ACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAA > 1:3429561/1‑150 ACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAA > 1:3429732/1‑150 CGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGACCAGCGGTAAGCGCGGGTCGTCGACCATGGCATCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGACAAGCCAGCCGGAGCATCGCAGAAGG > 1:4323681/1‑150 GCACCCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGGCCGGCGGTCCGCGCGGGTCGTCGACCATGGCGTCGCCAGCTTCACGGCCGCCGATCACCCGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTgt > 1:287680/1‑148 CACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGAC > 2:287164/1‑52 CACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGAC > 2:287137/1‑52 CACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGAC < 1:287164/52‑1 CACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCCGGTGGCGCTGAC < 1:287137/52‑1 ACCCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCA > 1:2908577/1‑150 ACCCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCA > 1:2908576/1‑150 ACCCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCA > 1:1030084/1‑150 CCCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAG > 1:4175326/1‑150 CCGCATGGGTCGCGAAGTCGGCCCACGCGGGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGG > 2:4508893/1‑150 ATGGGTCGCGAGGTCGGCCCACGC‑GGTGCTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTT > 2:1044930/1‑150 CTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCACGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCG < 2:1743089/150‑1 CTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCCTGCCAGGcgt < 2:2397706/150‑4 CTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCG < 2:1743130/150‑1 CTGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCG < 1:4508893/150‑1 TGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > 1:3950893/1‑150 TGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > 1:3111284/1‑150 TGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > 1:2831417/1‑150 TGCCGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > 1:1675853/1‑150 CTGAAAGCCTTCGGCGATGCTCCGGCTGGCTTGGCACAACTGGTGATCGGCGGCCGTGAAGCTGGCGAAGCCATGGTCGACGACCCGCGCGTACCGCTGGTCAGCGCCACCGGCAGCACCCGCATGGGTCGCGAAGTCGGCCCACGC‑GTTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6005338‑6005183‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgccGGTGGCGCTGACCAGCGGTACGCGCGGGTCGTCGACCATGGCTTCGCCAGCTTCACGGCCGCCGATCACCAGTTGTGCCAAGCCAGCCGGAGCATCGCCGAAGGCTTTCAGGGCTTTTTCGAACAACGCCTGGCAGGCCAGGGCGG > NC_002947/6005228‑6005373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |