New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	139996 =	12 (0.720)	3 (0.190)	3/276	1.8	21.0%	coding (508/1782 nt)	kinB	alginate biosynthesis sensor protein KinB
	?	NC_002947	140016 =	11 (0.680)					coding (488/1782 nt)	kinB	alginate biosynthesis sensor protein KinB

GCCACACCCGCTCGCAGCATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACCGCGCATTGC‑TGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/140143‑139996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaCGGGTGCGTTCCTC  >  NC_002947/140016‑140029                                                                                                                                                                     GCCACACCCGCTCGCAGCATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACCGCGCATTGC‑TGGTCgcc              <  2:139672/150‑4 GCCACACCCGCTCGCAGCATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACCGCGCATTGC‑TGGTCgcc              <  2:67069/150‑4          GCTCGCAGCATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCACTGACC‑AGCAATGCGCGGTCACGGGTGCGTTC     <  1:33661/150‑1                   ATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACC‑AGCAATGCGCGGTCACGGGTGCGTTCCTC  <  1:373759/144‑1                   ATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACC‑AGCAATGCGCGGTCACGGGTGCGTTCCTC  >  2:373759/1‑144                                                                                                                                                                     GCCACACCCGCTCGCAGCATGGGTGTCGATCAGCCTCTTGGGGCCGCGTTCAATCAGGTGCGCACCGACCTCATCGATTCCCACAAGCAGGCATTGGACCTGATTACCCGTAGCGAGGAACGCACCCGTGACCGCGCATTGC‑TGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/140143‑139996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaCGGGTGCGTTCCTC  >  NC_002947/140016‑140029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.