New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	139996 =	12 (0.720)	3 (0.190)	3/276	1.8	21.0%	coding (508/1782 nt)	kinB	alginate biosynthesis sensor protein KinB
	?	NC_002947	140016 =	11 (0.680)					coding (488/1782 nt)	kinB	alginate biosynthesis sensor protein KinB

AACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGGC  >  NC_002947/139878‑140143                                                                                                                                            |                                                                                                                                gctcgcagcatgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcaccactgaccagcaatgcgcggtcaCGGGTGCGTTc                                                                                                                       <  1:33661‑M2/11‑1 (MQ=255)          atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgtgaccagcaatgcgcggtcaCGGGTGCGTTCCTc                                                                                                                    >  2:373759‑M2/131‑144 (MQ=255)          atgggtgtcgatcagcctcttggggccgcgttcaatcaggtgcgcaccgacctcatcgattcccacaagcaggcattggacctgattacccgtagcgaggaacgcacccgtgaccagcaatgcgcggtcaCGGGTGCGTTCCTc                                                                                                                    <  1:373759‑M2/14‑1 (MQ=255)                ttGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATc                                                                                                       >  2:178033/1‑150 (MQ=255)                             cGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          <  1:181665/150‑1 (MQ=255)                              gATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTg                                                                                         >  2:343838/1‑150 (MQ=255)                                       gCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGa                                                                                >  2:194815/1‑150 (MQ=255)                                                                         aaGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAAcgcg                                              <  1:194815/150‑1 (MQ=255)                                                                          aGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCgg                                             <  1:371632/150‑1 (MQ=255)                                                                             ccAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGccc                                          >  2:31575/1‑150 (MQ=255)                                                                               aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          <  1:211929/100‑1 (MQ=255)                                                                               aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt                                                                                          >  2:211929/1‑100 (MQ=255)                                                                                                       aGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAtgctg                >  1:253859/1‑150 (MQ=255)                                                                                                         gaggaacgcacccgTGACCGCGCATTGCT‑GGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt                    <  1:373759‑M1/130‑1 (MQ=255)                                                                                                         gaggaacgcacccgTGACCGCGCATTGCT‑GGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt                    >  2:373759‑M1/15‑144 (MQ=255)                                                                                                            gaacgcacccgTGACCGCGCATTGCT‑GGTCAGTGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGc           <  1:33661‑M1/139‑1 (MQ=255)                                                                                                                  accacTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGgtgt     <  2:151389/150‑1 (MQ=255)                                                                                                                     ggcGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGgc  <  2:67069‑M1/147‑1 (MQ=255)                                                                                                                     ggcGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGgc  <  2:139672‑M1/147‑1 (MQ=255)                                                                                                                                            |                                                                                                                                AACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGTGGC  >  NC_002947/139878‑140143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.