New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 139996 = | 12 (0.720) | 3 (0.190) | 3/276 | 1.8 | 21.0% | coding (508/1782 nt) | kinB | alginate biosynthesis sensor protein KinB |
? | NC_002947 | 140016 = | 11 (0.680) | coding (488/1782 nt) | kinB | alginate biosynthesis sensor protein KinB |
ATCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGT > NC_002947/139859‑140140 | aTCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATgc > 1:151389/1‑150 (MQ=255) ttGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATc > 2:178033/1‑150 (MQ=255) cGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt < 1:181665/150‑1 (MQ=255) gATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTg > 2:343838/1‑150 (MQ=255) gCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGa > 2:194815/1‑150 (MQ=255) aaGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAAcgcg < 1:194815/150‑1 (MQ=255) aGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCgg < 1:371632/150‑1 (MQ=255) ccAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGccc > 2:31575/1‑150 (MQ=255) aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt < 1:211929/100‑1 (MQ=255) aGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCt > 2:211929/1‑100 (MQ=255) aGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAtgctg > 1:253859/1‑150 (MQ=255) gaggaacgcacccgTGACCGCGCATTGCT‑GGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt < 1:373759‑M1/130‑1 (MQ=255) gaggaacgcacccgTGACCGCGCATTGCT‑GGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCAt > 2:373759‑M1/15‑144 (MQ=255) gaacgcacccgTGACCGCGCATTGCT‑GGTCAGTGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGc < 1:33661‑M1/139‑1 (MQ=255) accacTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGgtgt < 2:151389/150‑1 (MQ=255) | ATCGAAATTGCCCTTGCCCAACTGGTCGGCCGCCTTGGCCAAGGCTTCGATCGGCTGGCCGAAACGCCGGGCGATGTTGTGCGCGGTGATAAAGCCCAGTACCAACACCACCAACCCCATCAGGCCGAGTACACCACTGACCA‑GCAATGCGCGGTCACGGGTGCGTTCCTCGCTACGGGTAATCAGGTCCAATGCCTGCTTGTGGGAATCGATGAGGTCGGTGCGCACCTGATTGAACGCGGCCCCAAGAGGCTGATCGACACCCATGCTGCGAGCGGGTGT > NC_002947/139859‑140140 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |