| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5758343 = | 18 (0.820) | 4 (0.240) | 4/200 | 0.9 | 22.5% | intergenic (+42/‑646) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase |
| ? | NC_002947 | 5760143 = | 14 (0.840) | intergenic (+189/+329) | PP_5050/PP_5051 | transposase/hypothetical protein | |||||
CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5758485‑5758343‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAA > NC_002947/5760143‑5760276 CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCG < 1:151890/136‑1CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCG < 1:544851/136‑1CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCG < 1:570691/136‑1CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCG < 1:96249/136‑1 GTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGgggaa > 1:81357/1‑131 AGAGTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCG < 1:241510/136‑1 CTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTGAGTCGTCTGAATGCCCCGTTCCTGTGTCC > 1:37140/1‑136 GCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCAATTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCg > 1:45396/1‑135 GGAGCGGCCTTGTGTCGCGATGGGCTGCAAAGCGGTCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCC > 1:158714/1‑136 AGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAG > 1:510118/1‑136 AGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCACAGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAG > 1:529539/1‑136 GCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTT < 1:436315/136‑1 TGGGGCGCAAAGCGGCCCCCGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCAGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAACACCCGCAAAGCCCAGAATTCACGGCATTTGCAA > 2:353475/1‑136 TGGGGCGCAAAGCGG‑CCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAA > 2:53475/1‑136 GGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAA > 2:287940/1‑136 CGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5758485‑5758343‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAA > NC_002947/5760143‑5760276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |