New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758343 =	18 (0.820)	4 (0.240)	4/200	0.9	22.5%	intergenic (+42/‑646)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5760143 =	14 (0.840)					intergenic (+189/+329)	PP_5050/PP_5051	transposase/hypothetical protein

GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAA  >  NC_002947/5760008‑5760276                                                                                                                                        |                                                                                                                                      ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                                                                                                       >  2:425864/1‑136 (MQ=255) ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                                                                                                       >  1:73411/1‑136 (MQ=255) ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                                                                                                       >  1:404384/1‑136 (MQ=255)   agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgcg                                                                                                                                     >  1:178292/1‑136 (MQ=255)     aaaTTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCa                                                                                                                                   <  2:551720/136‑1 (MQ=255)      gtggagattggccagcaggcccggcctcttcgcgggtgaacccgctcctacgacgaccgcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggggggaa                                                                                                                                  >  1:81357‑M2/131‑131 (MQ=255)         tctcTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGc                                                                                                                               <  1:361518/136‑1 (MQ=255)          agagtggccagcaggcccggcctcttcgcgggtgaacccgctcctacgacgaccgcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCg                                                                                                                              <  1:241510‑M2/10‑1 (MQ=255)                                            agagagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGtt                                                                                            >  2:26687/1‑136 (MQ=255)                                                     ctacgacgaccgcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTGAGTCGTCTGAATGCCCCGTTCCTGTGtcc                                                                                   >  1:37140‑M2/84‑136 (MQ=255)                                                                gcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCAATTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCAcctcg                                                                        >  1:45396‑M2/73‑135 (MQ=255)                                                                                    ccATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCa                                                    >  1:436634/1‑136 (MQ=255)                                                                                              tcCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGcc                                          <  1:236760/136‑1 (MQ=255)                                                                                                 tACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGAATGGGCGCAAAGCGGCCCCCGCCAATTCAGTCCTCTGAATTCACCCTTACAGTTCCCCCATCACCACAGGAACGCACAAAAACCCACCAAATACAGCCaaa                                       >  2:512727/1‑136 (MQ=16)                                                                                                       aaTCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAccc                                 <  2:312549/136‑1 (MQ=255)                                                                                                       aaTCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAccc                                 <  1:197555/136‑1 (MQ=255)                                                                                                       aaTCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAccc                                 <  2:499864/136‑1 (MQ=255)                                                                                                       aaTCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAccc                                 <  2:544635/136‑1 (MQ=255)                                                                                                                ggagcggccttgtgtcgcgatgggCTGCAAAGCGGTCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGccc                        >  1:158714‑M2/25‑136 (MQ=255)                                                                                                                  agcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAg                      >  1:510118‑M2/23‑136 (MQ=255)                                                                                                                  agcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCACAGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAg                      >  1:529539‑M2/23‑136 (MQ=255)                                                                                                                                gcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCtttt        <  1:436315‑M2/128‑1 (MQ=255)                                                                                                                                    tgggGCGCAAAGCGGCCCCCGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCAGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAACACCCGCAAAGCCCAGAATTCACGGCATTTGCaa    >  2:353475‑M2/5‑136 (MQ=255)                                                                                                                                    tgggGCGCAAAGCGG‑CCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCaaa   >  2:53475‑M2/5‑136 (MQ=255)                                                                                                                                      ggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCaaaa  >  2:287940‑M2/3‑136 (MQ=255)                                                                                                                                        |                                                                                                                                      GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCAAAA  >  NC_002947/5760008‑5760276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.