New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5758343 = | 18 (0.820) | 4 (0.240) | 4/200 | 0.9 | 22.5% | intergenic (+42/‑646) | glnG/PP_5050 | two‑component system DNA‑binding response regulator GlnL/GlnG/transposase |
? | NC_002947 | 5760143 = | 14 (0.840) | intergenic (+189/+329) | PP_5050/PP_5051 | transposase/hypothetical protein |
CTGGGTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAC > NC_002947/5758209‑5758472 | ttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgccc > 2:287940‑M1/135‑136 (MQ=255) tttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctgggccgctttgcgcCCCa > 2:53475‑M1/133‑136 (MQ=255) ttgcaaatgccgtgaattctgggctttgcgggtgttttggccggattttgaggggatttgtgccttcctgaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcgggggccgctttgcgcCCCa > 2:353475‑M1/133‑136 (MQ=255) gggTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCa > 1:359006/1‑136 (MQ=255) aaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATcgc < 1:436315‑M1/8‑1 (MQ=255) ctgggctttgcgggtgatttggccggattttgaggggatttgtgccttcctgtggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCt > 1:529539‑M1/115‑136 (MQ=255) ctgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCt > 1:510118‑M1/115‑136 (MQ=255) cTGACGCCCAAGATCAAGGAGGGGGGGTTTTATGTGGCCGGGGGGTATGTTGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTc < 1:361881/136‑1 (MQ=38) gggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctgggaccgctttgcagCCCATCGCGACACAAGGCCGCTcc > 1:158714‑M1/113‑136 (MQ=255) cAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGa < 1:133753/136‑1 (MQ=255) agggggCCGGGGGGCTTGATGCGGACGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGAt < 2:532165/132‑1 (MQ=38) ttgaGCAAGGGGATGACCACTGAGCTGTTATTTTGCTTTTTTTTTGGGGGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc < 2:360986/135‑1 (MQ=25) cgaggtgcagcgggcacaggaacggtgcattcagacgactgaattggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc > 1:45396‑M1/65‑136 (MQ=255) atgaGGAAGGTGATGACCACTGAGCTCTTAATTAGCTTTTTAGATTGCTGGGGCTGCTTTCCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc < 2:332377/136‑1 (MQ=255) tgaGTAAGGTTATCACCACTGTGCTCTGAATTAGGTTTTTAGATTGGTGGGGGTGCTTTGCTGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgcg < 2:369975/136‑1 (MQ=38) ggacacaggaacggggcattcagacgactcaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAg > 1:37140‑M1/54‑136 (MQ=255) atgaCCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATCCGGTGGAAACACATCGCGGACGTCGTAgg > 2:493184/1‑136 (MQ=255) ccACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCg > 1:391033/1‑136 (MQ=255) cACTGAGCTCTTAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCgg < 1:299975/136‑1 (MQ=255) aCTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATAGCGGTCGTCGGAGGAGCggg > 1:300075/1‑136 (MQ=255) aGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCa > 2:401508/1‑136 (MQ=255) gCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCAc > 1:38333/1‑136 (MQ=255) tctTAATTTGTTTTTTTTTTTGGTGGGGCGGCTTGCCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCAccc < 1:493184/136‑1 (MQ=37) aTTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACCTCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGaa > 1:556523/1‑136 (MQ=255) gATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc < 1:225576/94‑1 (MQ=255) gATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc > 2:225576/1‑94 (MQ=255) gCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCctgctg < 1:182600/136‑1 (MQ=255) cgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCActct < 1:241510‑M1/126‑1 (MQ=255) ttccccCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc > 1:81357‑M1/7‑136 (MQ=255) | CTGGGTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAC > NC_002947/5758209‑5758472 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |