New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3385530	6 (0.330)	13 (0.720)	12/244	NT	65.0%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4459341	8 (0.450)					coding (13/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3385400‑3385530 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTGCCGCAAGATA  <  NC_002947/4459341‑4459209                                                                                                                                                                                                                                                                          TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTA                                                                                                                                  >  2:62631/1‑136    CTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTG                                                                                                                               <  2:355498/136‑1                  GAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCACGGCGAGCTC                                                                                                                 <  1:407966/136‑1                    AGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCT                                                                                                               <  2:473703/136‑1                                                  GCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCT                                                                                 >  1:473152/1‑136                                                     GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGC                                                                              >  2:91050/1‑136                                                          TCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAG                                                                         <  2:516549/136‑1                                                                     CGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCG                                                              >  1:534776/1‑136                                                                                     CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCA                                              >  1:245458/1‑136                                                                                     CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCA                                              >  2:333326/1‑136                                                                                                AATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGC                                   <  1:333326/136‑1                                                                                                 ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCT                                  >  1:299648/1‑136                                                                                                                CCTTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTA                   >  1:230450/1‑136                                                                                                                  TTATCTCGGCATGACCCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATA                 <  1:156185/136‑1                                                                                                                                 CCCTTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTGCCGCAAGATA  <  1:359748/136‑1                                                                                                                                                                                                                                                                          TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3385400‑3385530 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTATTGATCAAGGCGAGCTCCTGGTTGTTCCTGGAGTTGTGGTTGTCGGGCTGGCCGGAGCGCGTGAAGCGATGGGGCCTGTCAGCACTTGAAATGGCTTGCTGACTTTCGCTATAGCGTGCCGCAAGATA  <  NC_002947/4459341‑4459209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.