New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3385530	6 (0.330)	13 (0.720)	12/244	NT	65.0%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4459341	8 (0.450)					coding (13/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

AACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCT  >  NC_002947/3385396‑3385664                                                                                                                                       |                                                                                                                                       aaCCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCa                                                                                                                                       <  1:522513/136‑1 (MQ=255)     ttCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCtttta                                                                                                                                   >  2:62631‑M1/1‑131 (MQ=255)        cTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattg                                                                                                                                <  2:355498‑M1/136‑9 (MQ=255)                      gAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcacggcgagctc                                                                                                                  <  1:407966‑M1/136‑23 (MQ=255)                        aGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcct                                                                                                                <  2:473703‑M1/136‑25 (MQ=255)                                 gcgcGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGaaa                                                                                                       >  2:459197/1‑136 (MQ=255)                                        gCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCt                                                                                                <  2:382833/136‑1 (MQ=255)                                                      gCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggct                                                                                  >  1:473152‑M1/1‑82 (MQ=255)                                                         gggCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggc                                                                               >  2:91050‑M1/1‑79 (MQ=255)                                                              tCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggag                                                                          <  2:516549‑M1/136‑63 (MQ=255)                                                                tAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATcc                                                                        <  1:304841/136‑1 (MQ=255)                                                                         cGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcg                                                               >  1:534776‑M1/1‑63 (MQ=255)                                                                         cGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTAt                                                               >  2:502368/1‑136 (MQ=255)                                                                                         cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagca                                               >  2:333326‑M1/1‑47 (MQ=255)                                                                                         cTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagca                                               >  1:245458‑M1/1‑47 (MQ=255)                                                                                              agaACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCt                                          >  1:10161/1‑136 (MQ=255)                                                                                                    aaTGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggc                                    <  1:333326‑M1/136‑101 (MQ=255)                                                                                                     aTGTCCTAATTTTTGCCTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggct                                   >  1:299648‑M1/1‑35 (MQ=255)                                                                                                     aTGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGt                                   >  2:387550/1‑136 (MQ=255)                                                                                                                    ccTTATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgcta                    >  1:230450‑M1/1‑20 (MQ=255)                                                                                                                      ttATCTCGGCATGACCCCttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgctata                  <  1:156185‑M1/136‑119 (MQ=255)                                                                                                                                     cccttttattgatcaaggcgagctcctggttgttcctggagttgtggttgtcgggctggccggagcgcgtgaagcgatggggcctgtcagcacttgaaatggcttgctgactttcgctatagcgtgccgcaagata   <  1:359748‑M1/136‑134 (MQ=255)                                                                                                                                      ccATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCt  >  1:503549/1‑136 (MQ=255)                                                                                                                                       |                                                                                                                                       AACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCATACCGGCATGAAGCAGCGCTGCGATAATGAAAGGAGCCTTTTTCTCTAGATACTCAGCCATCCCACCCGTATTGCTCGACTCCAACTGAAGCTTCAGCGTTTCATACTGTTGGCGGATCGAGGCATCGCGCCT  >  NC_002947/3385396‑3385664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.