| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3385530 | 6 (0.330) | 13 (0.720) | 12/244 | NT | 65.0% | coding (501/546 nt) | PP_2985 | hypothetical protein |
| ? | NC_002947 | = 4459341 | 8 (0.450) | coding (13/696 nt) | pcaI | 3‑oxoadipate CoA‑transferase subunit A | |||||
CCCTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTG > NC_002947/4459206‑4459472 | cccTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATaaaa > 1:118849/1‑136 (MQ=255) ccTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAc < 2:532059/136‑1 (MQ=255) caaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACg > 1:420583‑M2/130‑136 (MQ=255) tATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggg < 1:359748‑M2/136‑4 (MQ=255) tataGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataa < 1:156185‑M2/136‑19 (MQ=255) taGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataagg > 1:230450‑M2/1‑116 (MQ=255) gTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGa < 2:454218/136‑1 (MQ=255) aGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacat > 1:299648‑M2/1‑101 (MQ=255) ggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTa < 2:209400‑M2/41‑1 (MQ=255) gCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacatt < 1:333326‑M2/136‑37 (MQ=255) cAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACgg < 1:183133/136‑1 (MQ=255) gcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGtt < 2:262537‑M2/50‑1 (MQ=255) tGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 1:245458‑M2/1‑89 (MQ=255) tGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 2:333326‑M2/1‑89 (MQ=255) ctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATgg < 1:50594‑M2/62‑1 (MQ=255) cGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacg > 1:534776‑M2/1‑73 (MQ=255) cgcgCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCgg < 1:451924/136‑1 (MQ=255) cTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattaga < 2:516549‑M2/136‑75 (MQ=255) gCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 2:91050‑M2/1‑57 (MQ=255) cAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCa < 2:219489/136‑1 (MQ=255) aGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgc > 1:473152‑M2/1‑54 (MQ=255) aGGAGCTCGCCTTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgct < 2:473703‑M2/136‑113 (MQ=255) gAGCTCGCCGTGATCAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttc < 1:407966‑M2/136‑115 (MQ=255) ttGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTgg < 2:292112/77‑1 (MQ=255) ttGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTgg > 1:532626/1‑77 (MQ=255) ttGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTgg < 2:532626/77‑1 (MQ=255) ttGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTgg > 1:292112/1‑77 (MQ=255) cAATAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgag < 2:355498‑M2/136‑129 (MQ=255) tAAAAggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 2:62631‑M2/1‑5 (MQ=255) | CCCTATCTTGCGGCACGCTATAGCGAAAGTCAGCAAGCCATTTCAAGTGCTGACAGGCCCCATCGCTTCACGCGCTCCGGCCAGCCCGACAACCACAACTCCAGGAACAACCAGGAGCTCGCCTTGATCAATAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGGTCGGTGGCTTCGGCACGGCTGGCATGCCGTCCGAGCTGATCGATGGCCTCATTGCCACCGGTGCCCGCGACCTG > NC_002947/4459206‑4459472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |