| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5818832 = | 44 (0.270) | 18 (0.130) | 10/232 | NT | 29.2% | intergenic (+40/+89) | PP_5092/pilT | NLP/P60 protein/twitching motility protein |
| ? | NC_002947 | 5818895 = | 49 (0.340) | intergenic (+103/+26) | PP_5092/pilT | NLP/P60 protein/twitching motility protein | |||||
GGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5818997‑5818832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAC > NC_002947/5818895‑5819043 GGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTc > 1:4047364/1‑149 GGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTAC < 2:4663399/150‑1 GGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCATAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTG > 2:1992243/1‑150 GCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGT < 1:2859146/150‑1 CGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTG < 2:4451147/150‑1 GGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCATCGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG < 2:3088728/150‑1 GGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG < 2:4145320/150‑1 GGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCAGTGG > 1:3456577/1‑150 GGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCACTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG < 1:3545731/150‑1 GAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGG > 2:2405125/1‑150 GAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCGGTGGG > 2:2405021/1‑150 AGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGA < 2:4393134/150‑1 GGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGC < 1:832024/150‑1 GCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCT > 2:3286894/1‑137 GCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCT < 1:3286894/137‑1 CTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCAACCGGTGGGAGCGGGCGTGCCCCCGAAGGGGCCGTTGCCGGGACTACAAGCCGTGGCTCAACCCGCGCTCCCTCAGCCGCC > 1:315948/1‑150 CCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATC > 2:972347/1‑150 GCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCC > 2:4086801/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCAGCGTCAGCATCCCCTCC > 2:4469493/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 1:4925895/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCC > 2:4116384/1‑150 CCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCGCC > 1:3968134/1‑150 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCG > 2:3055536/1‑150 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTT > 1:3306795/1‑90 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTT < 2:3306795/90‑1 CACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCG > 1:1722149/1‑150 ACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCACCGC > 1:2549342/1‑150 ACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGC > 2:5354043/1‑150 ACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGC > 2:5354088/1‑150 ATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCC > 2:2047991/1‑150 TGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCACCGCCGCCCCG > 1:1654757/1‑150 AGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 1:3055536/150‑1 AGAGCGACGCGCTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAA < 1:972347/150‑1 ACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCGCCGCCGCCCCGCCCTGCATCACAGAAGACAACAGCGCCc > 1:4370767/1‑149 CTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCCCCCTGCATCACAGAAGACAACAGCGCCCAC > 1:4804104/1‑150 CTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCACCGCCGCCCCGCCCTGCATCACTGAAGACAACAGCGCCAAC > 1:4360777/1‑150 ctttcGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACCACTGCGCCAACCGC > 2:3363222/6‑150 TGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGC > 2:4734840/1‑150 GGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCC < 1:1135351/150‑1 GGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCC < 1:3989073/150‑1 GGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACAGCGCCAACCGCCC > 2:4271895/1‑150 GCGTGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGA > 1:2682405/1‑150 GCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCC < 2:1597582/143‑1 GCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCC > 1:1597582/1‑143 CGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAA < 1:4113643/150‑1 GCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCAGCAACACTGAAGACAACTGCGCCAACCGCCCCTCCCCAAC > 1:4325995/1‑150 GGGCGGCGGAGGGGATGCTGACGATGGAGGGGGCGTTGCGGAGGCTGAGGGAGCGAGGGTTGATCAAAGGCTTGTAGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5818997‑5818832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAAC > NC_002947/5818895‑5819043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |