| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 27 [0] | [0] 26 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 26 (1.340) | 17/116 | 0.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT > NC_000913/1978435‑1978559 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 2:375070‑M1/1‑68 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag < 2:133137‑M1/68‑7 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt > 1:621807‑M1/1‑61 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 1:520514‑M1/1‑50 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 2:181222‑M1/1‑50 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt > 2:65048‑M1/1‑48 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg > 1:93953‑M1/1‑46 (MQ=255) tGCGTGATGCAGATCACA‑AAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg < 2:183752‑M1/68‑24 (MQ=255) gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATAtataagtcatacttttgttttgg < 1:344076‑M1/68‑24 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg < 2:734244‑M1/68‑25 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:105621‑M1/68‑26 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:217522‑M1/68‑26 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgt < 2:113697‑M1/68‑28 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:741624‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:181222‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:234837‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:228909‑M1/68‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:25945‑M1/63‑26 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt > 1:25945‑M1/1‑38 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:429022‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:249524‑M1/1‑33 (MQ=255) caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt > 2:209653‑M1/1‑28 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa > 1:734910‑M1/1‑23 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa > 2:458116‑M1/1‑23 (MQ=255) aTTACTTAACATAAATGtataagtaatactattgttttgggtgtatttcaatctgttaaaaagttttt > 2:213243‑M1/1‑17 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 2:188060‑M1/1‑12 (MQ=255) tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac < 2:734911‑M1/68‑58 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT > NC_000913/1978435‑1978559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |