Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 27 [0] | [0] 26 | insB1–insA | insB1,insA |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1978502 | 0 (0.000) | 26 (1.340) | 17/116 | 0.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein |
GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAC > NC_000913/1979217‑1979335 | ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg < 2:133137‑M2/6‑1 (MQ=255) tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt > 1:621807‑M2/62‑68 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 1:520514‑M2/51‑68 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 2:181222‑M2/51‑68 (MQ=255) aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt > 2:65048‑M2/49‑68 (MQ=255) tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg > 1:93953‑M2/47‑68 (MQ=255) tgcgtgatgcagatcacaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg < 2:183752‑M2/23‑1 (MQ=255) gcgtgatgcagatcacacaaaacactcaattacttaacataaataTATAAGTCATACTTTTGTTTTgg < 1:344076‑M2/23‑1 (MQ=255) cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg < 2:734244‑M2/24‑1 (MQ=255) gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 2:217522‑M2/25‑1 (MQ=255) gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 2:105621‑M2/25‑1 (MQ=255) gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtgt < 2:113697‑M2/27‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 2:741624‑M2/29‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:181222‑M2/29‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 2:234837‑M2/29‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:228909‑M2/29‑1 (MQ=255) gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 2:25945‑M2/25‑1 (MQ=255) gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt > 1:25945‑M2/39‑63 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:429022‑M2/34‑68 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:249524‑M2/34‑68 (MQ=255) caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt > 2:209653‑M2/29‑68 (MQ=255) cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa > 1:734910‑M2/24‑68 (MQ=255) cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa > 2:458116‑M2/24‑68 (MQ=255) attacttaacataaatgTATAAGTAATACTATTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt > 2:213243‑M2/18‑68 (MQ=255) ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta > 2:188060‑M2/13‑68 (MQ=255) taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac < 2:734911‑M2/57‑1 (MQ=255) | GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAC > NC_000913/1979217‑1979335 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |