Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	27 [0]	[0] 26	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	26 (1.340)	17/116	0.1	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAC  >  NC_000913/1979217‑1979335                                                               |                                                         ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                     <  2:133137‑M2/6‑1 (MQ=255)  tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                    >  1:621807‑M2/62‑68 (MQ=255)             ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                         >  1:520514‑M2/51‑68 (MQ=255)             ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                         >  2:181222‑M2/51‑68 (MQ=255)               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                       >  2:65048‑M2/49‑68 (MQ=255)                 tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                     >  1:93953‑M2/47‑68 (MQ=255)                  tgcgtgatgcagatcacaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                    <  2:183752‑M2/23‑1 (MQ=255)                  gcgtgatgcagatcacacaaaacactcaattacttaacataaataTATAAGTCATACTTTTGTTTTgg                                    <  1:344076‑M2/23‑1 (MQ=255)                   cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                   <  2:734244‑M2/24‑1 (MQ=255)                    gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                  <  2:217522‑M2/25‑1 (MQ=255)                    gtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                  <  2:105621‑M2/25‑1 (MQ=255)                      gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtgt                                <  2:113697‑M2/27‑1 (MQ=255)                        tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                              <  2:741624‑M2/29‑1 (MQ=255)                        tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                              <  1:181222‑M2/29‑1 (MQ=255)                        tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                              <  2:234837‑M2/29‑1 (MQ=255)                        tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                              <  1:228909‑M2/29‑1 (MQ=255)                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                  <  2:25945‑M2/25‑1 (MQ=255)                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                  >  1:25945‑M2/39‑63 (MQ=255)                              tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                        >  1:429022‑M2/34‑68 (MQ=255)                              tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                        >  1:249524‑M2/34‑68 (MQ=255)                                   caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                   >  2:209653‑M2/29‑68 (MQ=255)                                        cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa              >  1:734910‑M2/24‑68 (MQ=255)                                        cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa              >  2:458116‑M2/24‑68 (MQ=255)                                              attacttaacataaatgTATAAGTAATACTATTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt        >  2:213243‑M2/18‑68 (MQ=255)                                                   ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta   >  2:188060‑M2/13‑68 (MQ=255)                                                    taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac  <  2:734911‑M2/57‑1 (MQ=255)                                                               |                                                         GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAC  >  NC_000913/1979217‑1979335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑