New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4164667 = | 34 (1.110) | 7 (0.250) | 3/122 | 2.7 | 21.7% | coding (1029/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter |
? | NC_000913 | 4164716 = | 19 (0.670) | coding (1078/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter |
CGTTGATCATATCCATCCTCAACATAACCTGTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4164705‑4164667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAGCACGCAGTGACG > NC_000913/4164716‑4164779 CGTTGATCATATCCATCCTCAACATACCCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGG > 2:93369/1‑68 CGTTGATCATATCCATCCTCAACATAACCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGG > 2:94822/1‑68 GTTGATCATATCCATCCTCAACATAACCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGGC > 2:200678/1‑68 GTTGATCATATCCATCCTCAACATAACCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGGC > 2:850426/1‑68 GTTGATCATATCCATCCTCAACATAACCTGTACCCGGC < 1:621595/38‑1 GTTGATCATATCCATCCTCAACATAACCTGTACCCGGC > 2:621595/1‑38 ATAACCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAG < 1:200678/68‑1 ATAACCTGTACCCGGCATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAG < 1:94822/68‑1 ATAACCTGTACCCGGCAGCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAG < 1:93369/68‑1 CCGGCATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAGCACGCAGTGAC > 1:575338/1‑68 CGGCATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAGCACGCAGTGACG < 1:1127197/68‑1 CGGCATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAGCACGCAGTGACG < 2:575338/68‑1 CGTTGATCATATCCATCCTCAACATAACCTGTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4164705‑4164667 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcATCTATCTGACCGGGCTGCAACAAGTCGGCGATTTTACCTTTGAAGGCGCAGCACGCAGTGACG > NC_000913/4164716‑4164779 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |