| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2077808 = | 31 (1.010) | 10 (0.400) | 4/108 | 2.1 | 21.0% | coding (240/375 nt) | cbtA | CP4‑44 prophage; toxin of the YeeV‑YeeU toxin‑antitoxin system |
| ? | NC_000913 | 2077982 = | 50 (2.000) | pseudogene (43/168 nt) | yeeW | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related | |||||
CGGGTCATCAGGCCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2077885‑2077808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggcgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC > NC_000913/2077982‑2078046 CGGGTCATCAGGCCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGT < 2:580077/68‑1 CAGGCCGGGCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCTGGTACAGGCGC < 2:171311/68‑1 CGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGT > 1:326294/1‑68 CGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGT > 1:357329/1‑68 CGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGT > 1:973876/1‑68 CGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGT > 2:79505/1‑68 TCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGA > 2:801852/1‑68 TCGATGCTGATTATTAACTGAGAGCGGGTACAGGCGCTGGCTATGGGGCCCATTGTCGTTGACAGTGA > 1:913252/1‑68 GATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATG > 2:106343/1‑68 GATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATG > 2:161936/1‑68 GGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTA < 1:161936/68‑1 GGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTA < 2:326294/68‑1 TACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAAT > 2:264415/1‑68 AGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAG > 2:628189/1‑68 CTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC < 2:357329/68‑1 CGGGTCATCAGGCCGGTCGCCCTGCGAGCCCGGAGGATATCGATGCTGTTTATTAACTGAGAGCGGGTACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2077885‑2077808‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacaggcgctgGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGC > NC_000913/2077982‑2078046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |