| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2077808 = | 31 (1.010) | 10 (0.400) | 4/108 | 2.1 | 21.0% | coding (240/375 nt) | cbtA | CP4‑44 prophage; toxin of the YeeV‑YeeU toxin‑antitoxin system |
| ? | NC_000913 | 2077982 = | 50 (2.000) | pseudogene (43/168 nt) | yeeW | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related | |||||
ACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGG > NC_000913/2077742‑2077873 | aCTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCa > 2:895467/1‑68 (MQ=255)aCTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCa > 1:1076454/1‑68 (MQ=255)aCTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCa > 1:746199/1‑68 (MQ=255) gcggccttattaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAg < 2:357329‑M1/3‑1 (MQ=255) gtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGCCCAGCCGGGATTCAGCGcc > 2:649385/1‑68 (MQ=255) gtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGcc < 2:317160/68‑1 (MQ=255) gtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGcc > 2:73460/1‑68 (MQ=255) gtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGcc > 2:681254/1‑68 (MQ=255) gtgATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGcc < 1:396110/68‑1 (MQ=255) cttattaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAGCGCCt > 2:628189‑M1/61‑68 (MQ=255) attaatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTa > 2:264415‑M1/58‑68 (MQ=255) taatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTAcc < 2:326294‑M1/13‑1 (MQ=255) taatcagttcagtgatattaacaccatcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTAcc < 1:161936‑M1/13‑1 (MQ=255) gAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGct > 2:357871/1‑68 (MQ=255) tttCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCa < 1:357871/68‑1 (MQ=255) ttCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAg > 1:675164/1‑68 (MQ=255) ttCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAg < 2:716208/68‑1 (MQ=255) ctcGTTGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCTCTCTCAGtt < 2:589176/68‑1 (MQ=255) ctcGTGGATAAATACGCTCTTGTGCGGACCTACCAGCCGTGAGTCAGCGCCTGTACCCGCTCTCAGtt < 2:500062/68‑1 (MQ=255) ctcGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGtt < 2:480686/68‑1 (MQ=255) ctcGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGta < 1:353667/68‑2 (MQ=255) ctcGTGGAAAAATAATCGCTTTTGCTTACCGACCAGCCGGGATTCATCTCCTGTTCCCGCTCTCAGtt < 1:492800/68‑1 (MQ=255) tgAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTtaataa < 1:1137137/67‑1 (MQ=255) catcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc > 2:161936‑M1/32‑68 (MQ=255) catcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc > 2:106343‑M1/32‑68 (MQ=255) aCGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 1:1124106/68‑1 (MQ=255) aCGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 1:208828/68‑1 (MQ=255) aCGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATc < 1:491568/68‑1 (MQ=255) tcactgtcaacgacaatgggccccatagcCAGCGCCTGTACCCGCTCTCAGTTAATAATCAGCATCGa > 1:913252‑M1/30‑68 (MQ=255) tcaatgtcaacgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGa > 2:801852‑M1/30‑68 (MQ=255) gcgCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATAtcct < 2:739169/66‑1 (MQ=255) acgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCg > 1:357329‑M1/21‑68 (MQ=255) acgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCg > 1:326294‑M1/21‑68 (MQ=255) acgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCg > 1:973876‑M1/21‑68 (MQ=255) acgacaatgtgccccatatcCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCg > 2:79505‑M1/21‑68 (MQ=255) aCCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGc > 2:519567/1‑68 (MQ=255) aCCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGc < 2:172687/68‑1 (MQ=255) aCCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCATCCggga > 1:448712/1‑67 (MQ=255) ccGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCACCGTGCt < 2:403847/68‑1 (MQ=255) ccAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCa > 1:633423/1‑68 (MQ=255) ttCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCgg < 1:750629/68‑1 (MQ=255) ttCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCgg > 1:641389/1‑68 (MQ=255) tCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCa > 1:808501/1‑57 (MQ=255) tCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCa < 2:808498/57‑1 (MQ=255) | ACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTCAGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGG > NC_000913/2077742‑2077873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |