New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2158238 =	13 (0.420)	4 (0.140)	3/122	2.7	25.8%	coding (2976/3123 nt)	mdtB	multidrug efflux system, subunit B
	?	NC_000913	2158297 =	11 (0.390)					coding (3035/3123 nt)	mdtB	multidrug efflux system, subunit B

CGTGGTAAACAGCGTCAGCACCTGGCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2158307‑2158238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTTT  >  NC_000913/2158297‑2158361                                                                                                                                         CGTGGTAAACAGCGTCAGCACCTGGCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGAC                                                                     <  1:848180/68‑1                         GCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGACGCTGTTTACCACGCCGGTGATTTA                                             >  1:201844/1‑68                         GCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGACGCTGTTTACCACGCCGGTGATT                                               <  1:155501/66‑1                         GCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGACGCTGTTTACCACGCCGGTGATT                                               >  2:155501/1‑66                                     ACCGCCGACCATGCCGATACCTAACGGACGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGA                                 >  2:446706/1‑68                                                                   ACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTT   >  2:305945/1‑68                                                                    CGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGC                        <  1:284316/46‑1                                                                    CGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGC                        >  2:284316/1‑46                                                                    CGCTGTTTACCACGCCGGTGATTTAATTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTTT  >  2:161734/1‑68                                                                                                                                         CGTGGTAAACAGCGTCAGCACCTGGCTGACAATCAGACCGCCGACCATGCCGATACCTAACGGACGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2158307‑2158238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTTT  >  NC_000913/2158297‑2158361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.