| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2158238 = | 13 (0.420) | 4 (0.140) | 3/122 | 2.7 | 25.8% | coding (2976/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913 | 2158297 = | 11 (0.390) | coding (3035/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
GCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTTTGCC > NC_000913/2158230‑2158364 | gcgGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCt < 1:814427/68‑1 (MQ=255) GTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACg < 1:848180‑M1/68‑1 (MQ=255) tAGGTATCGGCAGGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCTCGCCGGTGatt < 1:1004212/68‑1 (MQ=255) tAGGTAGCGGCATGGTCGTCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGatt < 1:1121589/68‑1 (MQ=255) ggTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACAACGACGGTGattta > 1:668887/1‑68 (MQ=255) gctgacaatcagaccgccgaccatgccgatacctaacggacgacgcTGTTTACCACGCCGGTGattta > 1:201844‑M2/47‑68 (MQ=255) gctgacaatcagaccgccgaccatgccgatacctaacggacgacgcTGTTTACCACGCCGGTGatt < 1:155501‑M2/20‑1 (MQ=255) gctgacaatcagaccgccgaccatgccgatacctaacggacgacgcTGTTTACCACGCCGGTGatt > 2:155501‑M2/47‑66 (MQ=255) ggCATGGGCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCt < 2:533469/68‑1 (MQ=255) cATGGTCGGCGGTCTGATTGTCAGCCTGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGt > 1:1016316/1‑68 (MQ=255) accgccgaccatgccgatacctaacggacgacgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGa > 2:446706‑M2/35‑68 (MQ=255) cggcggTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTTTTTGCTGTTCGAcc > 1:1113165/1‑68 (MQ=255) cTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGTCCGCCTGGc < 1:591905/68‑1 (MQ=255) tGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATtgt > 2:610554/1‑68 (MQ=255) tGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATtgt > 2:857181/1‑68 (MQ=255) gCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGcc > 1:512417/1‑68 (MQ=255) acgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCtt > 2:305945‑M2/5‑68 (MQ=255) cgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGc < 1:284316‑M2/43‑1 (MQ=255) cgcTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGc > 2:284316‑M2/4‑46 (MQ=255) cgcTGTTTACCACGCCGGTGATTTAATTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCttt > 2:161734‑M2/4‑68 (MQ=255) tGTATACCACGCCGGTGATTTAAATGCAGTTCGACAGCATGGCATAGAGGACCAAAAGCCGCTATGcc > 2:278500/1‑68 (MQ=255) | GCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAGCCGCTTTGCC > NC_000913/2158230‑2158364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |