| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2158238 = | 13 (0.420) | 4 (0.140) | 3/122 | 2.7 | 25.8% | coding (2976/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913 | 2158297 = | 11 (0.390) | coding (3035/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
TGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCT > NC_000913/2158171‑2158297 | tgaCCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTg > 2:672875/1‑68 (MQ=255) aaagcggcttttggtccacaatgccaggcggtcgaacagcaattaaatcaccggcgtggtaaacaGcg > 2:161734‑M1/66‑68 (MQ=255) aagcggcttttggtccacaatgccaggcggtcgaacagcaaataaatcaccggcgtggtaaacaGcgt > 2:305945‑M1/65‑68 (MQ=255) ggcggcTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGt < 2:78134/68‑1 (MQ=255) ggcggcGCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGCGGCGGCGCGGAACTGCGTCGTCCGt < 1:1133615/68‑1 (MQ=255) ggcTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAg > 2:369379/1‑68 (MQ=255) ctctGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGt < 1:805785/68‑1 (MQ=255) gccaggcggtcgaacagcaaataaatcaccggcgtggtaaacaGcg < 1:284316‑M1/3‑1 (MQ=255) gccaggcggtcgaacagcaaataaatcaccggcgtggtaaacaGcg > 2:284316‑M1/44‑46 (MQ=255) gcgcTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGt > 2:1120388/1‑68 (MQ=255) tcgaacagcaaataaatcaccggcgtggtaaacaGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGt > 2:446706‑M1/35‑68 (MQ=255) cGCTGATGTTGAGTACCGGGGGCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGt < 2:1140753/68‑1 (MQ=255) gATGTTGAGTTCCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGa < 2:16717/68‑1 (MQ=255) taaatcaccggcgtggtaaacaGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGc > 1:201844‑M1/23‑68 (MQ=255) aatcaccggcgtggtaaacaGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGc > 2:155501‑M1/21‑66 (MQ=255) aatcaccggcgtggtaaacaGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGc < 1:155501‑M1/46‑1 (MQ=255) aCCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCa > 2:714610/1‑68 (MQ=255) gggTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTg < 2:340462/68‑1 (MQ=255) ggTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGc > 1:534411/1‑68 (MQ=255) gTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCt < 1:613912/68‑1 (MQ=255) gcgGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCt < 1:814427/68‑1 (MQ=255) | TGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCT > NC_000913/2158171‑2158297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |