| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3355606 | 12 (0.650) | 5 (0.310) | 4/116 | 1.3 | 24.7% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3355642 | 20 (1.230) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
GGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAT > NC_000913/3355585‑3355707 | ggAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGc > 1:250776/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 2:121193/1‑68 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac > 1:318346/1‑68 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:122065/68‑1 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 2:42897/68‑1 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:497357/68‑1 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACAACCCGCCTGGCAGAACAACCCGGa > 1:290179/1‑68 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGGCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:452649/68‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTGCCACCCGCCTGGCAGAACAACCCGGat > 2:500411/1‑68 (MQ=255) aGGCGGGATGGACATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagc > 1:441086‑M2/1‑43 (MQ=255) ggatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 2:1493/68‑1 (MQ=255) atggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 2:281754/68‑1 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgttatccatc < 2:412264‑M2/68‑38 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgttatccatc < 1:25165‑M2/68‑38 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTgag > 1:626009/1‑66 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAGCCCGGATATGGACACGGAACTGCGt > 2:409487/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt < 1:273627/68‑1 (MQ=255) ccGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgttatccatcgaactg > 1:462890‑M2/1‑25 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCctt < 2:250775/68‑1 (MQ=255) gCGTCTATTAGTACCAcccgcctggcagcagcagttccagcatgttagccatcgaactggagtcagag > 2:44111‑M2/1‑16 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:659067/68‑1 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:659787/68‑1 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:538776/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 1:337179/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 2:403727/1‑68 (MQ=255) | GGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAT > NC_000913/3355585‑3355707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |