| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 857615 | 34 (1.790) | 12 (0.630) | 6/112 | 1.0 | 26.1% | intergenic (+60/+181) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| ? | NC_000913 | = 857713 | NA (NA) | noncoding (98/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAgcctgatgcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/857557‑857615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCT < NC_000913/857713‑857637 TGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGC > 1:503658/1‑68 GTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCT > 1:87577/1‑68 CGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC < 2:87578/68‑1 TGATGACAAATGCAAAATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC > 1:394824/1‑53 TGATGACAAATGCAAAATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC < 2:394825/53‑1 AATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGT < 1:8696/68‑1 AATAGCCTCATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCAGCAGATTCAATATATTGCAGGT < 1:597625/68‑1 ATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC < 1:618648/37‑1 ATAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC > 2:618649/1‑37 TAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC < 1:782014/36‑1 TAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC > 1:465079/1‑36 TAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC < 2:465080/36‑1 TAGCCTGATGCGGCGTTAACGCCTTATCCGGCCTAC > 2:782015/1‑36 GCCTGATGCGGCGTTAACGCCTTACCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTG < 1:50022/68‑1 CCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCTGGTACTGC > 2:782444/1‑68 CCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGa > 1:398517/1‑67 CCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGC > 1:77765/1‑68 TGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGG < 1:392275/68‑1 GGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCT > 2:419930/1‑68 TGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAgcctgatgcg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/857557‑857615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGGCGTTAACGCCTTATCCGGCCTACAAAGTCCTGCAGATTCAATATATTGCAGGTACTGCGTAGGCCT < NC_000913/857713‑857637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |