| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 857615 | 34 (1.790) | 12 (0.630) | 6/112 | 1.0 | 26.1% | intergenic (+60/+181) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| ? | NC_000913 | = 857713 | NA (NA) | noncoding (98/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTG > NC_000913/857557‑857680 | tGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAgcctgatgc > 1:503658‑M1/1‑59 (MQ=255) tATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTa > 1:737214/1‑68 (MQ=255) tCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACg > 2:237979/1‑68 (MQ=255) cGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCt < 1:21770/68‑1 (MQ=255) tctccccGATACTGTCGGGGTGACGTCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTa < 1:433249/65‑1 (MQ=255) tCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTa < 2:813642/68‑1 (MQ=255) ccGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAgg < 1:610567/68‑1 (MQ=255) ccGATACTGTCGGGGTGACGGCGGCTGACGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAgg < 1:579095/68‑1 (MQ=255) cGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGc > 1:760282/1‑68 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGCCAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 2:187779/1‑68 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTa < 2:743052/58‑1 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTa > 1:743051/1‑58 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:126209/68‑1 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:495358/68‑1 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:417207/1‑68 (MQ=255) aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:700383/68‑1 (MQ=255) gTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAgcctgatgcggcgttaacgccttatccggcct > 1:87577‑M1/1‑36 (MQ=255) tCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAg < 2:546689/68‑1 (MQ=255) cGGGGTGACGGCGGCTGATGACAAATGCAAAATAgcctgatgcggcgttaacgccttatccggcctac < 2:87578‑M1/68‑35 (MQ=255) ggggTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTa < 2:737215/68‑1 (MQ=255) gTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCt < 1:106059/68‑1 (MQ=255) gTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCt < 2:754482/68‑1 (MQ=255) ggcggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAat > 2:371222/1‑68 (MQ=255) gcTGATGACAAATGCAAAATCGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:327854/1‑50 (MQ=12) gcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:833541/50‑1 (MQ=255) gcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:327855/50‑1 (MQ=255) gcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 2:833542/1‑50 (MQ=255) tgatgaCAAATGCAAAATAgcctgatgcggcgttaacgccttatccggcctac < 2:394825‑M1/53‑35 (MQ=255) tgatgaCAAATGCAAAATAgcctgatgcggcgttaacgccttatccggcctac > 1:394824‑M1/1‑19 (MQ=255) aCAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCt < 1:555539/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 2:815746/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 2:196839/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 2:371881/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 2:749163/68‑1 (MQ=255) cAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGAc < 2:179936/68‑1 (MQ=255) aaaaTAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACt < 1:95886/68‑1 (MQ=255) aaTAgcctgatgcggcgttaacgccttatccggcctacaaagtcctgcagattcaatatattgcaggt < 1:8696‑M1/68‑65 (MQ=255) aaTAgcctcatgcggcgttaacgccttatccggcctacaaagtccagcagattcaatatattgcaggt < 1:597625‑M1/68‑65 (MQ=255) aTAgcctgatgcggcgttaacgccttatccggcctac > 2:618649‑M1/1‑3 (MQ=255) aTAgcctgatgcggcgttaacgccttatccggcctac < 1:618648‑M1/37‑35 (MQ=255) aTAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCaa > 1:352666/1‑45 (MQ=255) aTAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCaa < 2:352667/45‑1 (MQ=255) aTAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTg > 2:257424/1‑68 (MQ=255) tAgcctgatgcggcgttaacgccttatccggcctac > 1:465079‑M1/1‑2 (MQ=255) tAgcctgatgcggcgttaacgccttatccggcctac < 2:465080‑M1/36‑35 (MQ=255) tAgcctgatgcggcgttaacgccttatccggcctac > 2:782015‑M1/1‑2 (MQ=255) tAgcctgatgcggcgttaacgccttatccggcctac < 1:782014‑M1/36‑35 (MQ=255) | TGATTATCCGTCACCCCGATACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTG > NC_000913/857557‑857680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |