| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 857615 | 34 (1.790) | 12 (0.630) | 6/112 | 1.0 | 26.1% | intergenic (+60/+181) | ybiT/ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| ? | NC_000913 | = 857713 | NA (NA) | noncoding (98/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCCACATCA > NC_000913/857646‑857777 | cAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGGTAAGGCGTTAACGCCGCATCAGGC < 1:50022‑M2/68‑1 (MQ=255) aGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCa > 2:673133/1‑68 (MQ=255) aCCTGCGATATATTGAATCTGCAGGACTTTGTAGGCCGGAAAAGGCGTTAACGCCGCATCAGGCATTa > 1:243626/1‑68 (MQ=255) aCCTGCAATATATTGGATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:691547/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCTGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATGAGGCtatt < 1:597625‑M2/68‑5 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTACCGCCGCATCAGGCATTa > 2:245846/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtatt < 1:8696‑M2/68‑5 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 1:339693/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:76305/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:675913/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTa > 2:836098/1‑68 (MQ=255) aCCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCAGCATCAGGCAttg > 2:458974/1‑67 (MQ=255) ccTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTaa < 1:96808/68‑1 (MQ=255) cAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACaaa > 2:82989/1‑68 (MQ=255) ttCTGCATGACTTTGTAGGCCGGATAAGGCGTTAACTCCGCATCAGGCTTTAACAAAGCGCATTTGTc < 1:752685/67‑1 (MQ=18) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTc > 1:505455/1‑68 (MQ=255) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTc > 2:279121/1‑68 (MQ=255) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTc < 1:752684/68‑1 (MQ=255) aTCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCAGCATCAGGCATTAAAAAAGCGCAATTGTc > 1:502884/1‑68 (MQ=18) cAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCaa < 1:675912/68‑1 (MQ=255) ggACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATc > 2:569241/1‑68 (MQ=255) cTTTGTAGGCCGGATAAGGCGTTAACGCCGCAGCAGGCATTAACAAAGCGCATTTGGCAGCAATCTGa < 1:123911/68‑1 (MQ=255) cgTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTaa > 1:624817/2‑40 (MQ=255) cgTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTaa < 2:624818/39‑1 (MQ=255) gttggCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 2:811997/4‑68 (MQ=255) gTAGTCAGGATAAGGCGTTAACTACTCATAATGAATTAAAAAAGCTAATTTGTAAGAAATATGAGaaa > 2:684453/1‑68 (MQ=255) gTAGGCCGGATACGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTac > 2:358199/1‑67 (MQ=255) gTAGGCCGGATACGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 2:197117/1‑68 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtattttgcatttgtcatcagccgccgtcaccccg < 2:87578‑M2/68‑35 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtattttgcatttgtcatca < 2:394825‑M2/53‑20 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtattttgcatttgtcatca > 1:394824‑M2/1‑34 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtat < 1:618648‑M2/37‑4 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCtat > 2:618649‑M2/1‑34 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCta > 2:782015‑M2/1‑34 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCta < 1:782014‑M2/36‑3 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCta < 2:465080‑M2/36‑3 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCta > 1:465079‑M2/1‑34 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGtcatca > 2:478466/1‑58 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGtcatca < 1:478465/58‑1 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTac > 1:7602/1‑67 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 2:198126/1‑68 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 2:807068/1‑68 (MQ=255) gTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTaa > 1:441878/1‑68 (MQ=255) tAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAAc > 2:322188/1‑68 (MQ=255) aGGCCGGATAAGGCGTTAACGCCGCATCAGGCtattttgcatttgtcatcagccgccgtcaccccgac > 1:87577‑M2/1‑32 (MQ=255) aGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACg > 1:413759/1‑68 (MQ=255) ccGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCg > 2:519702/1‑68 (MQ=255) gCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGAttt > 2:540302/1‑68 (MQ=255) cGTTAACGCCGCATCAGGCATTAACAAAGCACATTTGTCAGCAATCTGAGTAACGTCGAATCGAtttt > 1:350409/1‑68 (MQ=255) aCGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTaa > 1:428684/1‑68 (MQ=255) gccgcATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATc > 2:70027/1‑68 (MQ=255) gcATCAGGCtattttgcatttgtcatcagccgccgtcaccccgacagtatcggggtgacggataatca > 1:503658‑M2/1‑9 (MQ=255) aTCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCcaca < 1:792300/68‑1 (MQ=255) aTCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCcaca < 1:198125/68‑1 (MQ=255) aTCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCcaca < 1:197116/68‑1 (MQ=255) aGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCCACATCa > 2:439922/1‑68 (MQ=255) | CAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCATTAACAAAGCGCATTTGTCAGCAATCTGAGTAACGTCGAATCGATTTTCTTAATCCCACATCA > NC_000913/857646‑857777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |