New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3255241 =	NA (NA)	4 (0.210)	4/112	1.5	40.0%	noncoding (25/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3255294 =	6 (0.320)					noncoding (78/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

GGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3255282‑3255241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGC  >  NC_000913/3255294‑3255354                                                                                                         tGTTGTTTATTTCGTTAATGTTGTTTGATTTTGTAGGCCGGACATGATGCGCCAGCATCGCATCCGGC                                     <  1:233124/67‑1   TTGTTTAAATAGTTAATGTTGTTGGATTTTGTAGGAAGGACAAGATGCGCCAGAATCGCATCCGGCAa                                   >  2:233125/1‑67     GTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGA                                 >  2:640915/1‑68              GTTAATGTTGTTGGATTTTGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAA                        <  1:640914/68‑1                                    GGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGC  >  2:365866/1‑68                                                                                                         GGTTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3255282‑3255241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGC  >  NC_000913/3255294‑3255354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.