New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3255241 =	NA (NA)	4 (0.210)	4/112	1.5	40.0%	noncoding (25/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3255294 =	6 (0.320)					noncoding (78/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACC  >  NC_000913/3255180‑3255282                                                              |                                          gcaaggccagataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgTCCGGcc                                     >  2:365866‑M1/62‑68 (MQ=255)                 gCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCaacaac                     <  1:580099/68‑1 (MQ=255)                      cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTac                >  2:447983/1‑67 (MQ=255)                       ttttggggatcgtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAAc               <  1:640914‑M1/29‑1 (MQ=255)                         gTAAAGACAGGCTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAACCCAACAACATTAACGa             <  1:545207/68‑1 (MQ=255)                           aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGc                                      >  1:24408/1‑41 (MQ=255)                           aaaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGc                                      <  2:24408/41‑1 (MQ=255)                               aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTa                                   <  1:534558/40‑1 (MQ=255)                               aCAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTa                                   >  2:534559/1‑40 (MQ=255)                                tcgtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAaac      >  2:640915‑M1/31‑68 (MQ=255)                                  ttgccggatgcgattctggcgcatcttgTCCTTCCTACAAAATCCAACAACATTAACTATTTAaacaa    >  2:233125‑M1/29‑68 (MQ=255)                                    gccggatgcgatgctggcgcatcatgTCCGGCCTACAAAATCAAACAACATTAACGAAATaaacaaca  <  1:233124‑M1/42‑2 (MQ=255)                                                              |                                          TTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACC  >  NC_000913/3255180‑3255282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.