New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3255241 =	NA (NA)	4 (0.210)	4/112	1.5	40.0%	noncoding (25/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3255294 =	6 (0.320)					noncoding (78/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

AAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGC  >  NC_000913/3255252‑3255354                                           |                                                             tgttgtttatttcgttaatgttgtttgattttgtaggccggaCATGATGCGCCAGCATCGCATCCGGc                                     <  1:233124‑M2/26‑1 (MQ=255)   ttgtttaaatagttaatgttgttggattttgtaggaaggaCAAGATGCGCCAGAATCGCATCCGGcaa                                   >  2:233125‑M2/41‑67 (MQ=255)     gtttaattcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGa                                 >  2:640915‑M2/39‑68 (MQ=255)        acaacaTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATcc                              <  2:756597/68‑1 (MQ=255)              ttAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaaa                        <  1:694235/68‑1 (MQ=255)              gttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaaa                        <  1:640914‑M2/39‑1 (MQ=255)                  cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTg                    >  1:271688/1‑68 (MQ=255)                   gAATTAAACAACCCGTAGGCCGGACAAGCTGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTgg                   >  1:486204/1‑68 (MQ=255)                    aaTTAAACACCCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGc                  <  1:650591/68‑1 (MQ=255)                         aacaacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTa             <  2:630110/68‑1 (MQ=255)                                    ggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGc  >  2:365866‑M2/8‑68 (MQ=255)                                           |                                                             AAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGC  >  NC_000913/3255252‑3255354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.