New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	771005 =	10 (0.310)	77 (2.410)	35/132	0.0	88.5%	intergenic (+394/‑453)	mngB/cydA	alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
	?	NC_000913	= 1050545	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

CTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/771071‑771005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT  <  NC_000913/1050545‑1050484                                                                                                                                   CTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAG                                                               >  2:557820/1‑68  TTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGG                                                              >  2:264146/1‑68  TTTAGTGACATTTATGTTTAAAATGTGAGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGG                                                              >  1:299439/1‑68   TTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGT                                                             >  2:990340/1‑68   TTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGT                                                             >  2:876441/1‑68   TTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGT                                                             >  2:1098028/1‑68       TGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATG                                                         >  2:580774/1‑68       TGACATTTATGTTTAAAATGTGTGAGATATAAGGCTGAAATTAGTTTCGGTTGGCAATTTAGGTAATG                                                         >  2:698159/1‑68        GACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGA                                                        >  2:335426/1‑68        GACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGA                                                        <  2:1173274/68‑1        GACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGA                                                        >  1:1093975/1‑68        GACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGA                                                        >  1:450660/1‑68        GACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGA                                                        >  2:1074462/1‑68         ACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGAC                                                       <  2:765817/68‑1          CATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACT                                                      <  1:409251/68‑1              TATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAA                                                  <  1:1011750/68‑1              TATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAA                                                  <  1:576860/68‑1                TGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACT                                                <  1:17367/68‑1                TGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACT                                                      <  1:1042277/62‑1                TGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACT                                                      >  2:1042276/1‑62                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTa                                               >  1:712963/1‑67                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTT                                               >  1:394966/1‑68                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTT                                               >  2:629435/1‑68                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTT                                               >  1:1030993/1‑68                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTT                                               >  1:60239/1‑68                 GTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTAGGCAATTAAGGTAATGACTCCAACTT                                               >  1:37894/1‑68                  TTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTA                                              <  2:419011/68‑1                  TTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTA                                              <  1:335426/68‑1                  TTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTA                                              <  1:557820/68‑1                       AATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGAT                                         >  2:879534/1‑68                       AATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATAAAGGTAATGACTCCAACTTATTGAT                                         >  2:1069555/1‑68                       AATGTGTGAGTTAAAAGGCTGAAATTAATTTCGGTTGGCAATTAAGGTAATGACTCAAAATTAATGAT                                         >  2:1159286/1‑68                        ATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCTATTAAGGTAATGACTCCAACTTATTGATA                                        >  2:468941/1‑68                        ATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATA                                        >  1:943716/1‑68                         aGTGAGAGTAATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGAAAAGAATACAACTTATTGATAG                                       >  1:1016150/2‑68                         TGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAG                                       >  1:1082453/1‑68                         TGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAG                                       >  1:1189932/1‑68                          GTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGT                                      <  1:599661/68‑1                            GTGAGTTATAAGTCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGT                                    <  1:529005/68‑1                              GAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTT                                  <  1:848886/68‑1                              GAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTT                                  <  2:33904/68‑1                              GAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTT                                  <  2:1030992/68‑1                               AGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTT                                 >  2:492578/1‑68                               AGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTT                                 >  1:29590/1‑68                               AGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTT                                 >  1:525227/1‑68                                 TTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTAT                               <  1:1074463/68‑1                                   ATAAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGT                             <  1:264146/68‑1                                     AAGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                           >  1:460217/1‑68                                      AGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                          >  2:49635/1‑68                                      AGGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                          >  1:397748/1‑68                                       GGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG                         >  2:25515/1‑68                                       GGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG                         >  1:684748/1‑68                                       GGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACT                                                      >  1:1192282/1‑39                                       GGCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACT                                                      <  2:1192280/39‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        <  2:1093974/68‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        >  2:928574/1‑68                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        <  2:367711/68‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        >  1:632562/1‑68                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        >  1:29073/1‑68                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGA                        <  1:580774/68‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGCTTTATGTTCAGA                        <  2:1040147/68‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTG                                     <  1:415755/55‑1                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTG                                     >  2:415755/1‑55                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACT                                                >  2:333928/1‑44                                        GCTGAAATTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACT                                                <  1:333928/44‑1                                              ATTAGTTTCGGTGGGCGATTAAGGTAATGACTCCAACGTATTGATAGTGTTTTATGATCAGATAATGC                  >  2:583739/1‑68                                               TTAGTTTCGGTTGGCTATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC                 <  2:299439/68‑1                                               TTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC                 <  2:1186502/68‑1                                               TTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCC                 <  1:645817/68‑1                                               TTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTAT                               >  1:380651/1‑54                                               TTAGTTTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTAT                               <  2:380651/54‑1                                                    TTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG            >  1:834995/1‑68                                                    TTCGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGACCGATG            >  1:172684/1‑68                                                      CGGTTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAC          <  1:876441/68‑1                                                         TTGGCAATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT       <  2:632562/68‑1                                                             ctATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCGCGATGACTTTGTCA   >  2:1023068/3‑68                                                              AATTAAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT  <  1:388735/68‑1                                                                                                                                   CTTTAGTGACATTTATGTTTAAAATGTGTGAGTTATAAGGCTGAAATTAGTTTCGGTTGGCAATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/771071‑771005 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT  <  NC_000913/1050545‑1050484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.