New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	771005 =	10 (0.310)	77 (2.410)	35/132	0.0	88.5%	intergenic (+394/‑453)	mngB/cydA	alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
	?	NC_000913	= 1050545	NA (NA)					noncoding (768/768 nt)	IS1	repeat region

ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGA  >  NC_000913/1050487‑1050601                                                           |                                                         aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg                                                 >  1:641570/1‑68 (MQ=39)   aaaGTCATCGGGCATTATCTGAACATAAAACACTATCTATAAGTTGGAGTCATTACCGACAAtacgta                                               >  1:846890/1‑68 (MQ=255)   aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta                                               >  1:858694/1‑68 (MQ=255)     aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg                                             >  1:531275/1‑68 (MQ=255)            gggCATTATCTGTACATATTAGTCTATCTTTAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga                                      <  1:277267/68‑1 (MQ=18)            gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga                                      <  1:1042810/68‑1 (MQ=255)            gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga                                      <  1:507964/68‑1 (MQ=255)            gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga                                      <  1:1172311/68‑1 (MQ=255)             ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGAt                                     >  2:415022/1‑68 (MQ=255)             ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGAt                                     >  2:634613/1‑68 (MQ=255)                 ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCatg                                 <  1:1193465/68‑3 (MQ=255)                 ttATCTGAACATAAAACACAATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                 <  2:847889/68‑1 (MQ=255)                   aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGTGATCAGGAt                               <  1:143094/68‑1 (MQ=255)                   aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAt                               <  2:655825/68‑1 (MQ=255)                    tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt                              >  1:989309/1‑68 (MQ=255)                    tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt                              >  1:1155146/1‑68 (MQ=255)                    tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt                              >  2:45987/1‑68 (MQ=255)                    tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt                              >  2:652586/1‑68 (MQ=255)                    tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAAGAtt                              >  2:973444/1‑68 (MQ=255)                     cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTg                             <  1:985849/68‑1 (MQ=255)                       gaccATATAACACTATCAATTAGTCGGAGGCATTACCGTCAATACGTACGCTTGAGATCAGGATTGTc                           <  2:1159459/65‑1 (MQ=25)                         aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTa                         >  1:569075/1‑68 (MQ=255)                         aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTa                         >  1:384823/1‑68 (MQ=255)                         aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTa                         >  1:171918/1‑68 (MQ=255)                          cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAc                        >  2:308829/1‑68 (MQ=255)                                acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                  >  1:1117361/1‑68 (MQ=255)                                acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                  >  2:881297/1‑68 (MQ=255)                                acacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg                  >  2:221510/1‑68 (MQ=255)                                 cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                 >  1:666401/1‑52 (MQ=255)                                 cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                 <  2:666401/52‑1 (MQ=255)                                 cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt                 <  1:317660/68‑1 (MQ=255)                                 cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt                 <  1:19524/68‑1 (MQ=255)                                   cTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtat               <  1:653266/68‑1 (MQ=255)                                      tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAc            <  2:803081/68‑1 (MQ=255)                                        aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACAt          >  1:145249/1‑68 (MQ=255)                                            aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt      >  1:913612/1‑68 (MQ=255)                                            aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt      >  1:231298/1‑68 (MQ=255)                                                ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGa  <  1:652586/68‑1 (MQ=255)                                                           |                                                         ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGA  >  NC_000913/1050487‑1050601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.