breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,375,835	0	C	G	63.6%	‑2.5 / 10.3	11	G43A (GGG→GCG)	menC	O‑succinylbenzoyl‑CoA synthase
*	NC_000913	86,365	0	G	C	58.8%	‑4.5 / 18.1	18	A246P (GCG→CCG)	ilvI	acetolactate synthase 3 large subunit
*	NC_000913	1,041,386	0	G	C	45.5%	14.9 / 12.7	22	G257A (GGA→GCA)	appA	phosphoanhydride phosphorylase
*	NC_000913	34,508	0	G	C	42.9%	1.1 / 15.4	14	G70A (GGA→GCA)	caiF	cai operon transcriptional activator
*	NC_000913	2,779,939	0	C	G	42.1%	14.2 / 13.5	19	A930P (GCA→CCA)	ypjA	adhesin‑like autotransporter
*	NC_000913	3,619,153	0	G	C	40.0%	3.0 / 10.3	10	intergenic (+164/‑39)	nikR/rhsB	transcriptional repressor, Ni‑binding/Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	NC_000913	4,296,060	0	C	T	38.5%	38.3 / 41.0	40	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	780,997	0	T	G	34.3%	28.0 / 12.4	35	intergenic (+79/‑71)	lysW/valZ	tRNA‑Lys/tRNA‑Val

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4067707 =	15 (0.790)	3 (0.180)	3/114	1.5	17.7%	coding (1570/2037 nt)	yihQ	putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase
	?	NC_000913	4067734 =	15 (0.910)					coding (1543/2037 nt)	yihQ	putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase