| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 33 (0.850) | 26 (0.700) | 6/124 | 2.5 | 35.0% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 65 (1.760) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3798257‑3798325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG < NC_000913/3798516‑3798479 ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 2:918524/1‑68ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 1:1309173/1‑68ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATA > 1:244605/1‑68 TTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGC > 1:1180563/1‑68 TATCGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGAC > 1:1449108/1‑68 CGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:1449103/68‑1 CGATATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:1180559/68‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG > 1:909085/1‑66 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG < 2:909080/66‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 2:1350611/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 1:1248522/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 2:259540/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 1:134435/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:1431379/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 2:1427301/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:1394050/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 1:1431384/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:134433/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 2:1248518/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 1:1350616/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 1:259542/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA > 1:1394055/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAA < 1:1427306/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA < 1:465593/64‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTTGCGTTGACCA > 2:465590/1‑64 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTAGCGTTGACCAA > 2:1310397/1‑65 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTTATACCGTAGCGTTGACCAA < 1:1310401/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTCATACCGTTGTGTTGACCAA < 2:1387699/65‑1 TATCTTTTACCGTATATGTTGGGGATACCATTTGATGAGTTTATTCATACCGTTGTGTTGACCAA > 1:1387704/1‑65 ACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3798257‑3798325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacCATTTGATGAGTTTATTTATACCGTTGCGTTGACCAAG < NC_000913/3798516‑3798479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |