| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 33 (0.850) | 26 (0.700) | 6/124 | 2.5 | 35.0% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 65 (1.760) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
AACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATC > NC_000913/3798455‑3798581 | aaCAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAgtg > 1:23726/1‑68 (MQ=255)aaCAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAgtg < 1:918529/68‑1 (MQ=255) cAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGtt > 2:834284/1‑68 (MQ=255) cAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGtt > 1:641474/1‑68 (MQ=255) cAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGtt > 2:526183/1‑68 (MQ=255) aGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGttt < 1:1183019/68‑1 (MQ=255) gAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTc > 2:689875/1‑68 (MQ=255) gaTGACAAAGTCGCTATACTTGGTCAACGCAACGGTATAAATAGACTCATCAAATGGTAGTGTTTCGa > 2:738591/2‑68 (MQ=255) gACAAAATCACTATACTTAGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGAttt < 1:704988/68‑1 (MQ=255) agaTCACTTTACTTTGTCAACGCATCGGTATATATAAACTCTTCAAATGGTAGTGTTTCGATTTCAAg < 2:1154645/66‑1 (MQ=255) taTCACTATACTTGGTCATCGCAACGGTATAAATAAACTCTTCAAATGGTAGTGTTTCGATTTCAAgt < 2:1234419/67‑1 (MQ=255) aaTCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgt < 2:308352/68‑1 (MQ=255) aaTCACTATACTTGGGCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgt < 2:1309169/68‑1 (MQ=255) taCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtct > 1:1154649/1‑66 (MQ=255) aCTTGGTCAACGCAGCGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtatt > 2:1150861/1‑68 (MQ=255) aCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtatt > 2:3438/1‑68 (MQ=255) aCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtatt > 1:66854/1‑68 (MQ=255) aCTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgtattggtatt > 2:970754/1‑68 (MQ=255) aCTTGGTCAACGCAACGGTATAAAAAAACTCATCAAATGGTAGTGTTACGATTTCAAgtagtggtatt > 1:375815/1‑68 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:909080‑M2/66‑29 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:909085‑M2/1‑38 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgta < 2:614262/59‑1 (MQ=255) cTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAgta > 1:614266/1‑59 (MQ=255) ttGGTCAACGCTACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:1310397‑M2/1‑37 (MQ=255) ttGGTCAACGCTACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:1310401‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcg < 2:1180559‑M2/68‑32 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcg < 2:1449103‑M2/68‑32 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:1350611‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:1248518‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:259540‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:1431379‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:1427301‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:1394050‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:1350616‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:134435‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:1394055‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:1248522‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:1427306‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:1431384‑M2/1‑37 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:134433‑M2/65‑29 (MQ=255) ttGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:259542‑M2/65‑29 (MQ=255) ttGGTCAACACAACGGTATGAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 1:1387704‑M2/1‑37 (MQ=255) ttGGTCAACACAACGGTATGAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 2:1387699‑M2/65‑29 (MQ=255) ttgTCAACGCAACTGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTc < 1:346315/66‑1 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata > 2:465590‑M2/1‑36 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagata < 1:465593‑M2/64‑29 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGAtt > 1:692844/1‑50 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGAtt < 2:692840/50‑1 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTc < 2:454760/68‑1 (MQ=255) tGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTc > 2:945141/1‑68 (MQ=255) ggTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCa < 1:945146/68‑1 (MQ=255) ggTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCa < 1:526186/68‑1 (MQ=255) gTCAACGCAACGGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcgata > 1:1449108‑M2/1‑34 (MQ=255) gTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTc < 1:208689/66‑1 (MQ=255) gTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTc > 2:208687/1‑66 (MQ=255) tCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAAt > 2:391470/1‑68 (MQ=255) gcaacgGTATAAATAAACTCATCAAATGgtatccccaacatatacggtaaaagatatcgatactgaaa > 1:1180563‑M2/1‑28 (MQ=255) gcaacgGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATc > 2:1288853/1‑68 (MQ=255) ggTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCg > 2:1038718/1‑68 (MQ=255) ggTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCg > 1:90560/1‑68 (MQ=255) aaataaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAc > 1:128900/1‑68 (MQ=255) ataaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAAccc > 2:952826/1‑68 (MQ=255) taaaCTCATCGAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:47280/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAgt < 1:1148994/35‑1 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAgt > 2:1148990/1‑35 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:1461196/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:731804/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:709940/1‑68 (MQ=255) taaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCg > 2:538466/1‑68 (MQ=255) aaaCTCATCAAATGGTTGTGTTTCGATTTCAAGTATTGGTTTTGTCAATAAATCTCGCGGTAACCCgg < 2:826881/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 2:66853/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 1:1150865/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 1:970759/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 2:244603/68‑1 (MQ=255) aaaCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 2:422828/68‑1 (MQ=255) aaCTCATCAAATGGTAGTGTTTCGATATCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGt > 1:714540/1‑68 (MQ=255) aCTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTa > 1:957086/1‑68 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAAt < 2:259976/50‑1 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAAt > 1:259978/1‑50 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg < 2:696223/65‑1 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCgg > 1:696227/1‑65 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTaa > 2:22328/1‑68 (MQ=255) cTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTaa > 2:83464/1‑68 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:900384/68‑1 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:1288857/68‑1 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:336612/68‑1 (MQ=255) catcaAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAat < 1:369714/68‑1 (MQ=255) aaTGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAt < 1:1228663/68‑1 (MQ=255) aTGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATc < 2:641470/68‑1 (MQ=255) tGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAt > 1:1267287/1‑66 (MQ=255) tGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAAt < 2:1267283/66‑1 (MQ=255) | AACAGAAATGACAAAATCACTATACTTGGTCAACGCAACGGTATAAATAAACTCATCAAATGGTAGTGTTTCGATTTCAAGTATTGGTATTGTCAATAAATCTTGCGGTAACCCGGTAAATATAATC > NC_000913/3798455‑3798581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |