| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 33 (0.850) | 26 (0.700) | 6/124 | 2.5 | 35.0% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 65 (1.760) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
TAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAA > NC_000913/3798260‑3798392 | tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 2:1010475/68‑1 (MQ=255)tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 2:1333875/68‑1 (MQ=255) aTCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt > 2:917224/1‑68 (MQ=255) tctcTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGATGGGGATACTAttt > 2:896218/1‑68 (MQ=255) tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt < 1:1097492/68‑1 (MQ=255) tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt < 1:1099290/68‑1 (MQ=255) tctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt < 1:181310/68‑1 (MQ=255) cTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGAt > 2:1091004/1‑68 (MQ=255) gAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGAttt > 1:618143/1‑68 (MQ=255) gAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGAttt > 1:1422945/1‑68 (MQ=255) ttAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTAtgatga > 1:544899/1‑68 (MQ=255) aaaGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGAtt < 1:917229/68‑1 (MQ=255) aaaGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGACTTATGATGAtt < 2:38124/68‑1 (MQ=255) gTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCgg > 1:1417241/1‑68 (MQ=255) tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgc > 1:1180563‑M1/1‑40 (MQ=255) tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCggg > 2:1328999/1‑68 (MQ=255) aGTATCGATATCTTTTACCGTAAATGTTGGGGATACTATTTGTATAGATTTAtgatga < 2:1157809/58‑1 (MQ=255) aGTATCGATATCTTTTACCGTAAATGTTGGGGATACTATTTGTATAGATTTAtgatga > 1:1157813/1‑58 (MQ=255) tATCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgac > 1:1449108‑M1/1‑34 (MQ=255) cGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:1449103‑M1/68‑38 (MQ=255) cGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:1180559‑M1/68‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaag < 2:909080‑M1/66‑39 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaag > 1:909085‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:1248522‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:134435‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:1350616‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 2:259540‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:1431379‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 2:1427301‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:1394050‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 2:1350611‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:259542‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:134433‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:1431384‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:1248518‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:1394055‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:1427306‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 1:465593‑M1/64‑37 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca > 2:465590‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgtagcgttgaccaa > 2:1310397‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgtagcgttgaccaa < 1:1310401‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttattcataccgttgtgttgaccaa < 2:1387699‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttattcataccgttgtgttgaccaa > 1:1387704‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTaaa > 1:262265/1‑68 (MQ=255) tCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg > 2:491136/1‑68 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg > 2:1326701/1‑68 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg > 1:105755/1‑68 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg > 1:572817/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 2:932905/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 2:74591/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:308354/1‑68 (MQ=255) tGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCg > 1:404764/1‑68 (MQ=255) ttGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGa > 2:328226/1‑68 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt > 1:341545/1‑68 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt > 1:343326/1‑68 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt < 1:231716/68‑1 (MQ=255) ggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTAc > 2:803077/1‑68 (MQ=255) ggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTAc > 1:947162/1‑68 (MQ=255) cTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGaa < 1:69510/68‑1 (MQ=255) | TAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAA > NC_000913/3798260‑3798392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |